Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00295

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00290 and CA264_00295 are separated by 95 nucleotidesCA264_00295 and CA264_00300 are separated by 176 nucleotides CA264_00290: CA264_00290 - acyl-ACP desaturase, at 68,977 to 69,957 _00290 CA264_00295: CA264_00295 - hypothetical protein, at 70,053 to 70,334 _00295 CA264_00300: CA264_00300 - VWA domain-containing protein, at 70,511 to 71,611 _00300 Position (kb) 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1at 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.983 kb on - strandat 69.983 kb on - strandat 69.983 kb on - strandat 70.006 kb on + strandat 70.007 kb on - strandat 70.008 kb on + strandat 70.008 kb on + strandat 70.008 kb on + strandat 70.009 kb on - strandat 70.009 kb on - strandat 70.009 kb on - strandat 70.015 kb on + strandat 70.055 kb on - strandat 70.091 kb on - strand, within CA264_00295at 70.097 kb on + strand, within CA264_00295at 70.177 kb on + strand, within CA264_00295at 70.180 kb on + strand, within CA264_00295at 70.180 kb on + strand, within CA264_00295at 70.181 kb on - strand, within CA264_00295at 70.308 kb on + strandat 70.308 kb on + strandat 70.360 kb on + strandat 70.360 kb on + strandat 70.360 kb on + strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.365 kb on + strandat 70.366 kb on - strandat 70.366 kb on - strandat 70.366 kb on - strandat 70.395 kb on + strandat 70.396 kb on - strandat 70.497 kb on + strandat 70.497 kb on + strandat 70.510 kb on + strandat 70.518 kb on + strandat 70.518 kb on + strandat 70.519 kb on - strandat 70.519 kb on - strandat 70.558 kb on + strandat 70.559 kb on - strandat 70.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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69,982 + -0.8
69,982 + +0.2
69,982 + +0.5
69,982 + -0.8
69,982 + -0.1
69,983 - -1.2
69,983 - -3.2
69,983 - -0.6
70,006 + +0.2
70,007 - -1.2
70,008 + -1.0
70,008 + -0.8
70,008 + -0.7
70,009 - -0.1
70,009 - -2.6
70,009 - -0.3
70,015 + -1.3
70,055 - +0.5
70,091 - CA264_00295 0.13 -1.3
70,097 + CA264_00295 0.16 -0.9
70,177 + CA264_00295 0.44 -0.7
70,180 + CA264_00295 0.45 -0.0
70,180 + CA264_00295 0.45 -0.7
70,181 - CA264_00295 0.45 +0.8
70,308 + -1.3
70,308 + +1.3
70,360 + -0.5
70,360 + -0.6
70,360 + -0.7
70,361 - -0.4
70,361 - +0.1
70,361 - -0.2
70,361 - -2.3
70,365 + -0.6
70,366 - -1.1
70,366 - -1.2
70,366 - +0.6
70,395 + -2.5
70,396 - +0.0
70,497 + -0.1
70,497 + -1.7
70,510 + -0.5
70,518 + -0.5
70,518 + +0.7
70,519 - +0.1
70,519 - -2.2
70,558 + -0.5
70,559 - -0.8
70,592 - -0.2

Or see this region's nucleotide sequence