Strain Fitness in Agrobacterium fabrum C58 around Atu1507

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1505 and Atu1506 are separated by 83 nucleotidesAtu1506 and Atu1507 are separated by 96 nucleotidesAtu1507 and Atu1508 are separated by 289 nucleotides Atu1505: Atu1505 - penicillin-binding protein, at 1,494,021 to 1,495,520 Atu1505 Atu1506: Atu1506 - hypothetical protein, at 1,495,604 to 1,495,864 Atu1506 Atu1507: Atu1507 - DNA gyrase subunit A, at 1,495,961 to 1,498,681 Atu1507 Atu1508: Atu1508 - hypothetical protein, at 1,498,971 to 1,499,600 Atu1508 Position (kb) 1495 1496 1497 1498 1499Strain fitness (log2 ratio) -2 -1 0 1 2at 1495.253 kb on + strand, within Atu1505at 1498.989 kb on - strandat 1499.010 kb on + strandat 1499.097 kb on - strand, within Atu1508at 1499.112 kb on + strand, within Atu1508at 1499.219 kb on - strand, within Atu1508at 1499.227 kb on - strand, within Atu1508at 1499.227 kb on - strand, within Atu1508at 1499.261 kb on - strand, within Atu1508at 1499.334 kb on - strand, within Atu1508at 1499.439 kb on + strand, within Atu1508at 1499.613 kb on + strandat 1499.676 kb on - strandat 1499.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,495,253 + Atu1505 0.82 -0.4
1,498,989 - +0.5
1,499,010 + -1.0
1,499,097 - Atu1508 0.20 -1.3
1,499,112 + Atu1508 0.22 -0.7
1,499,219 - Atu1508 0.39 -1.9
1,499,227 - Atu1508 0.41 -0.9
1,499,227 - Atu1508 0.41 +0.1
1,499,261 - Atu1508 0.46 -0.5
1,499,334 - Atu1508 0.58 -0.1
1,499,439 + Atu1508 0.74 -0.8
1,499,613 + +1.8
1,499,676 - -0.3
1,499,676 - -0.5

Or see this region's nucleotide sequence