Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4642

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4641 and Echvi_4642 are separated by 5 nucleotidesEchvi_4642 and Echvi_4643 are separated by 152 nucleotides Echvi_4641: Echvi_4641 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,553,707 to 5,555,617 _4641 Echvi_4642: Echvi_4642 - Organic radical activating enzymes, at 5,555,623 to 5,556,249 _4642 Echvi_4643: Echvi_4643 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 5,556,402 to 5,557,286 _4643 Position (kb) 5555 5556 5557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5554.688 kb on - strand, within Echvi_4641at 5554.831 kb on + strand, within Echvi_4641at 5554.831 kb on + strand, within Echvi_4641at 5554.831 kb on + strand, within Echvi_4641at 5554.834 kb on - strand, within Echvi_4641at 5554.834 kb on - strand, within Echvi_4641at 5554.834 kb on - strand, within Echvi_4641at 5554.842 kb on + strand, within Echvi_4641at 5554.842 kb on + strand, within Echvi_4641at 5554.842 kb on + strand, within Echvi_4641at 5554.842 kb on + strand, within Echvi_4641at 5554.843 kb on - strand, within Echvi_4641at 5554.843 kb on - strand, within Echvi_4641at 5554.844 kb on + strand, within Echvi_4641at 5554.844 kb on + strand, within Echvi_4641at 5554.845 kb on - strand, within Echvi_4641at 5554.845 kb on - strand, within Echvi_4641at 5554.885 kb on + strand, within Echvi_4641at 5554.887 kb on + strand, within Echvi_4641at 5554.887 kb on + strand, within Echvi_4641at 5554.919 kb on - strand, within Echvi_4641at 5554.924 kb on + strand, within Echvi_4641at 5554.924 kb on + strand, within Echvi_4641at 5554.925 kb on - strand, within Echvi_4641at 5554.925 kb on - strand, within Echvi_4641at 5555.002 kb on + strand, within Echvi_4641at 5555.048 kb on - strand, within Echvi_4641at 5555.108 kb on + strand, within Echvi_4641at 5555.213 kb on + strand, within Echvi_4641at 5555.213 kb on + strand, within Echvi_4641at 5555.213 kb on + strand, within Echvi_4641at 5555.214 kb on - strand, within Echvi_4641at 5555.287 kb on - strand, within Echvi_4641at 5555.287 kb on - strand, within Echvi_4641at 5555.288 kb on + strand, within Echvi_4641at 5555.288 kb on + strand, within Echvi_4641at 5555.288 kb on + strand, within Echvi_4641at 5555.289 kb on - strand, within Echvi_4641at 5555.289 kb on - strand, within Echvi_4641at 5555.290 kb on + strand, within Echvi_4641at 5555.290 kb on + strand, within Echvi_4641at 5555.290 kb on + strand, within Echvi_4641at 5555.290 kb on + strand, within Echvi_4641at 5555.290 kb on + strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.291 kb on - strand, within Echvi_4641at 5555.301 kb on - strand, within Echvi_4641at 5555.309 kb on - strand, within Echvi_4641at 5555.364 kb on - strand, within Echvi_4641at 5555.396 kb on - strand, within Echvi_4641at 5555.402 kb on + strand, within Echvi_4641at 5555.402 kb on + strand, within Echvi_4641at 5555.402 kb on + strand, within Echvi_4641at 5555.422 kb on - strand, within Echvi_4641at 5555.464 kb on - strandat 5555.522 kb on + strandat 5555.522 kb on + strandat 5555.522 kb on + strandat 5555.522 kb on + strandat 5555.522 kb on + strandat 5555.523 kb on - strandat 5555.523 kb on - strandat 5555.540 kb on - strandat 5555.551 kb on + strandat 5555.553 kb on + strandat 5555.554 kb on - strandat 5555.554 kb on - strandat 5555.554 kb on - strandat 5555.600 kb on + strandat 5555.624 kb on + strandat 5555.638 kb on - strandat 5555.706 kb on + strand, within Echvi_4642at 5555.707 kb on - strand, within Echvi_4642at 5555.820 kb on + strand, within Echvi_4642at 5555.820 kb on + strand, within Echvi_4642at 5555.821 kb on - strand, within Echvi_4642at 5555.977 kb on + strand, within Echvi_4642at 5555.985 kb on - strand, within Echvi_4642at 5555.985 kb on - strand, within Echvi_4642at 5556.030 kb on - strand, within Echvi_4642at 5556.112 kb on + strand, within Echvi_4642at 5556.113 kb on - strand, within Echvi_4642at 5556.113 kb on - strand, within Echvi_4642at 5556.136 kb on + strand, within Echvi_4642at 5556.192 kb on - strandat 5556.250 kb on - strandat 5556.252 kb on + strandat 5556.254 kb on + strandat 5556.266 kb on + strandat 5556.289 kb on - strandat 5556.351 kb on + strandat 5556.351 kb on + strandat 5556.351 kb on + strandat 5556.362 kb on - strandat 5556.362 kb on - strandat 5556.409 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,554,688 - Echvi_4641 0.51 -0.1
5,554,831 + Echvi_4641 0.59 -0.8
5,554,831 + Echvi_4641 0.59 -2.0
5,554,831 + Echvi_4641 0.59 -0.3
5,554,834 - Echvi_4641 0.59 +0.1
5,554,834 - Echvi_4641 0.59 +3.1
5,554,834 - Echvi_4641 0.59 +0.7
5,554,842 + Echvi_4641 0.59 -0.1
5,554,842 + Echvi_4641 0.59 -0.3
5,554,842 + Echvi_4641 0.59 -1.5
5,554,842 + Echvi_4641 0.59 +0.6
5,554,843 - Echvi_4641 0.59 -0.5
5,554,843 - Echvi_4641 0.59 +1.0
5,554,844 + Echvi_4641 0.59 -1.5
5,554,844 + Echvi_4641 0.59 -1.5
5,554,845 - Echvi_4641 0.60 -1.3
5,554,845 - Echvi_4641 0.60 +1.6
5,554,885 + Echvi_4641 0.62 -0.3
5,554,887 + Echvi_4641 0.62 -0.4
5,554,887 + Echvi_4641 0.62 +1.9
5,554,919 - Echvi_4641 0.63 -0.4
5,554,924 + Echvi_4641 0.64 +2.3
5,554,924 + Echvi_4641 0.64 +0.1
5,554,925 - Echvi_4641 0.64 -1.0
5,554,925 - Echvi_4641 0.64 +0.4
5,555,002 + Echvi_4641 0.68 +0.9
5,555,048 - Echvi_4641 0.70 -1.4
5,555,108 + Echvi_4641 0.73 -0.9
5,555,213 + Echvi_4641 0.79 +0.4
5,555,213 + Echvi_4641 0.79 +1.0
5,555,213 + Echvi_4641 0.79 -0.5
5,555,214 - Echvi_4641 0.79 +0.6
5,555,287 - Echvi_4641 0.83 -1.6
5,555,287 - Echvi_4641 0.83 +0.4
5,555,288 + Echvi_4641 0.83 +1.2
5,555,288 + Echvi_4641 0.83 +0.3
5,555,288 + Echvi_4641 0.83 -2.2
5,555,289 - Echvi_4641 0.83 +0.1
5,555,289 - Echvi_4641 0.83 +0.6
5,555,290 + Echvi_4641 0.83 -0.2
5,555,290 + Echvi_4641 0.83 +1.1
5,555,290 + Echvi_4641 0.83 +1.3
5,555,290 + Echvi_4641 0.83 -0.4
5,555,290 + Echvi_4641 0.83 +0.1
5,555,291 - Echvi_4641 0.83 +0.9
5,555,291 - Echvi_4641 0.83 -1.4
5,555,291 - Echvi_4641 0.83 +0.0
5,555,291 - Echvi_4641 0.83 +1.4
5,555,291 - Echvi_4641 0.83 -0.7
5,555,291 - Echvi_4641 0.83 +0.6
5,555,291 - Echvi_4641 0.83 +0.5
5,555,301 - Echvi_4641 0.83 +2.0
5,555,309 - Echvi_4641 0.84 +0.7
5,555,364 - Echvi_4641 0.87 -1.9
5,555,396 - Echvi_4641 0.88 -0.5
5,555,402 + Echvi_4641 0.89 -1.0
5,555,402 + Echvi_4641 0.89 -2.0
5,555,402 + Echvi_4641 0.89 -0.7
5,555,422 - Echvi_4641 0.90 -0.6
5,555,464 - -2.4
5,555,522 + +0.4
5,555,522 + -0.9
5,555,522 + -0.3
5,555,522 + +0.7
5,555,522 + -2.7
5,555,523 - -0.0
5,555,523 - +0.7
5,555,540 - +0.5
5,555,551 + -2.0
5,555,553 + +2.0
5,555,554 - +0.5
5,555,554 - -1.0
5,555,554 - +0.1
5,555,600 + +0.2
5,555,624 + -0.6
5,555,638 - -2.5
5,555,706 + Echvi_4642 0.13 -2.2
5,555,707 - Echvi_4642 0.13 -2.2
5,555,820 + Echvi_4642 0.31 -3.0
5,555,820 + Echvi_4642 0.31 -4.1
5,555,821 - Echvi_4642 0.32 -2.7
5,555,977 + Echvi_4642 0.56 -1.1
5,555,985 - Echvi_4642 0.58 -3.9
5,555,985 - Echvi_4642 0.58 -1.1
5,556,030 - Echvi_4642 0.65 -0.7
5,556,112 + Echvi_4642 0.78 -0.4
5,556,113 - Echvi_4642 0.78 -1.4
5,556,113 - Echvi_4642 0.78 +0.6
5,556,136 + Echvi_4642 0.82 -1.4
5,556,192 - -0.6
5,556,250 - -1.1
5,556,252 + +1.4
5,556,254 + +0.1
5,556,266 + -0.0
5,556,289 - -0.3
5,556,351 + +0.3
5,556,351 + -0.1
5,556,351 + +0.4
5,556,362 - -0.5
5,556,362 - +1.3
5,556,409 + -1.1

Or see this region's nucleotide sequence