Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2596

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2594 and Echvi_2595 overlap by 4 nucleotidesEchvi_2595 and Echvi_2596 are separated by 7 nucleotidesEchvi_2596 and Echvi_2597 are separated by 2 nucleotidesEchvi_2597 and Echvi_2598 overlap by 29 nucleotides Echvi_2594: Echvi_2594 - methyltransferase, FkbM family, at 3,077,449 to 3,078,075 _2594 Echvi_2595: Echvi_2595 - Mannosyltransferase OCH1 and related enzymes, at 3,078,072 to 3,078,809 _2595 Echvi_2596: Echvi_2596 - Glycosyltransferases involved in cell wall biogenesis, at 3,078,817 to 3,079,809 _2596 Echvi_2597: Echvi_2597 - hypothetical protein, at 3,079,812 to 3,080,513 _2597 Echvi_2598: Echvi_2598 - Protein of unknown function (DUF3118)., at 3,080,485 to 3,081,357 _2598 Position (kb) 3078 3079 3080Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3077.833 kb on + strand, within Echvi_2594at 3077.852 kb on + strand, within Echvi_2594at 3077.853 kb on - strand, within Echvi_2594at 3077.881 kb on + strand, within Echvi_2594at 3077.906 kb on + strand, within Echvi_2594at 3077.906 kb on + strand, within Echvi_2594at 3077.936 kb on + strand, within Echvi_2594at 3078.114 kb on - strandat 3078.179 kb on - strand, within Echvi_2595at 3078.309 kb on + strand, within Echvi_2595at 3078.343 kb on + strand, within Echvi_2595at 3078.409 kb on + strand, within Echvi_2595at 3078.409 kb on + strand, within Echvi_2595at 3078.409 kb on + strand, within Echvi_2595at 3078.410 kb on - strand, within Echvi_2595at 3078.420 kb on - strand, within Echvi_2595at 3078.421 kb on + strand, within Echvi_2595at 3078.421 kb on + strand, within Echvi_2595at 3078.421 kb on + strand, within Echvi_2595at 3078.421 kb on + strand, within Echvi_2595at 3078.422 kb on - strand, within Echvi_2595at 3078.431 kb on + strand, within Echvi_2595at 3078.431 kb on + strand, within Echvi_2595at 3078.431 kb on + strand, within Echvi_2595at 3078.432 kb on - strand, within Echvi_2595at 3078.432 kb on - strand, within Echvi_2595at 3078.432 kb on - strand, within Echvi_2595at 3078.432 kb on - strand, within Echvi_2595at 3078.432 kb on - strand, within Echvi_2595at 3078.436 kb on - strand, within Echvi_2595at 3078.460 kb on - strand, within Echvi_2595at 3078.523 kb on + strand, within Echvi_2595at 3078.524 kb on - strand, within Echvi_2595at 3078.527 kb on + strand, within Echvi_2595at 3078.527 kb on + strand, within Echvi_2595at 3078.527 kb on + strand, within Echvi_2595at 3078.527 kb on + strand, within Echvi_2595at 3078.549 kb on + strand, within Echvi_2595at 3078.550 kb on - strand, within Echvi_2595at 3078.550 kb on - strand, within Echvi_2595at 3078.575 kb on - strand, within Echvi_2595at 3078.634 kb on + strand, within Echvi_2595at 3078.672 kb on + strand, within Echvi_2595at 3078.672 kb on + strand, within Echvi_2595at 3078.673 kb on - strand, within Echvi_2595at 3078.690 kb on + strand, within Echvi_2595at 3078.693 kb on - strand, within Echvi_2595at 3078.705 kb on - strand, within Echvi_2595at 3078.705 kb on - strand, within Echvi_2595at 3078.727 kb on + strand, within Echvi_2595at 3078.731 kb on + strand, within Echvi_2595at 3078.732 kb on - strand, within Echvi_2595at 3078.744 kb on + strandat 3078.745 kb on - strandat 3078.767 kb on + strandat 3078.779 kb on + strandat 3078.810 kb on + strandat 3078.863 kb on - strandat 3078.864 kb on + strandat 3078.864 kb on + strandat 3078.864 kb on + strandat 3078.918 kb on + strand, within Echvi_2596at 3078.933 kb on + strand, within Echvi_2596at 3078.960 kb on + strand, within Echvi_2596at 3079.057 kb on + strand, within Echvi_2596at 3079.065 kb on + strand, within Echvi_2596at 3079.084 kb on - strand, within Echvi_2596at 3079.106 kb on + strand, within Echvi_2596at 3079.146 kb on + strand, within Echvi_2596at 3079.146 kb on + strand, within Echvi_2596at 3079.146 kb on + strand, within Echvi_2596at 3079.146 kb on + strand, within Echvi_2596at 3079.146 kb on + strand, within Echvi_2596at 3079.147 kb on - strand, within Echvi_2596at 3079.147 kb on - strand, within Echvi_2596at 3079.147 kb on - strand, within Echvi_2596at 3079.148 kb on + strand, within Echvi_2596at 3079.159 kb on - strand, within Echvi_2596at 3079.215 kb on + strand, within Echvi_2596at 3079.215 kb on + strand, within Echvi_2596at 3079.216 kb on - strand, within Echvi_2596at 3079.216 kb on - strand, within Echvi_2596at 3079.217 kb on + strand, within Echvi_2596at 3079.218 kb on - strand, within Echvi_2596at 3079.218 kb on - strand, within Echvi_2596at 3079.236 kb on + strand, within Echvi_2596at 3079.236 kb on + strand, within Echvi_2596at 3079.236 kb on + strand, within Echvi_2596at 3079.236 kb on + strand, within Echvi_2596at 3079.237 kb on - strand, within Echvi_2596at 3079.237 kb on - strand, within Echvi_2596at 3079.249 kb on - strand, within Echvi_2596at 3079.263 kb on + strand, within Echvi_2596at 3079.282 kb on - strand, within Echvi_2596at 3079.282 kb on - strand, within Echvi_2596at 3079.284 kb on + strand, within Echvi_2596at 3079.284 kb on + strand, within Echvi_2596at 3079.285 kb on - strand, within Echvi_2596at 3079.285 kb on - strand, within Echvi_2596at 3079.285 kb on - strand, within Echvi_2596at 3079.285 kb on - strand, within Echvi_2596at 3079.304 kb on - strand, within Echvi_2596at 3079.315 kb on + strand, within Echvi_2596at 3079.315 kb on + strand, within Echvi_2596at 3079.344 kb on + strand, within Echvi_2596at 3079.345 kb on - strand, within Echvi_2596at 3079.391 kb on + strand, within Echvi_2596at 3079.392 kb on - strand, within Echvi_2596at 3079.392 kb on - strand, within Echvi_2596at 3079.394 kb on - strand, within Echvi_2596at 3079.452 kb on + strand, within Echvi_2596at 3079.479 kb on - strand, within Echvi_2596at 3079.521 kb on - strand, within Echvi_2596at 3079.546 kb on - strand, within Echvi_2596at 3079.566 kb on + strand, within Echvi_2596at 3079.593 kb on - strand, within Echvi_2596at 3079.645 kb on - strand, within Echvi_2596at 3079.645 kb on - strand, within Echvi_2596at 3079.645 kb on - strand, within Echvi_2596at 3079.668 kb on - strand, within Echvi_2596at 3079.684 kb on - strand, within Echvi_2596at 3079.694 kb on + strand, within Echvi_2596at 3079.722 kb on - strandat 3079.751 kb on + strandat 3079.782 kb on - strandat 3079.785 kb on + strandat 3079.786 kb on - strandat 3079.788 kb on - strandat 3079.788 kb on - strandat 3079.800 kb on - strandat 3079.831 kb on + strandat 3079.832 kb on - strandat 3079.832 kb on - strandat 3079.866 kb on + strandat 3079.892 kb on + strand, within Echvi_2597at 3079.893 kb on - strand, within Echvi_2597at 3079.965 kb on - strand, within Echvi_2597at 3079.970 kb on + strand, within Echvi_2597at 3080.013 kb on + strand, within Echvi_2597at 3080.051 kb on - strand, within Echvi_2597at 3080.094 kb on - strand, within Echvi_2597at 3080.094 kb on - strand, within Echvi_2597at 3080.097 kb on + strand, within Echvi_2597at 3080.098 kb on - strand, within Echvi_2597at 3080.098 kb on - strand, within Echvi_2597at 3080.120 kb on - strand, within Echvi_2597at 3080.137 kb on - strandat 3080.140 kb on + strand, within Echvi_2597at 3080.141 kb on - strand, within Echvi_2597at 3080.235 kb on - strand, within Echvi_2597at 3080.255 kb on - strand, within Echvi_2597at 3080.287 kb on + strand, within Echvi_2597at 3080.288 kb on - strand, within Echvi_2597at 3080.309 kb on - strand, within Echvi_2597at 3080.309 kb on - strand, within Echvi_2597at 3080.309 kb on - strand, within Echvi_2597at 3080.315 kb on + strand, within Echvi_2597at 3080.315 kb on + strand, within Echvi_2597at 3080.316 kb on - strand, within Echvi_2597at 3080.316 kb on - strand, within Echvi_2597at 3080.333 kb on + strand, within Echvi_2597at 3080.337 kb on - strand, within Echvi_2597at 3080.375 kb on - strand, within Echvi_2597at 3080.396 kb on + strand, within Echvi_2597at 3080.396 kb on + strand, within Echvi_2597at 3080.396 kb on + strand, within Echvi_2597at 3080.397 kb on - strand, within Echvi_2597at 3080.397 kb on - strand, within Echvi_2597at 3080.397 kb on - strand, within Echvi_2597at 3080.492 kb on - strandat 3080.551 kb on - strandat 3080.551 kb on - strandat 3080.551 kb on - strandat 3080.551 kb on - strandat 3080.592 kb on - strand, within Echvi_2598at 3080.596 kb on - strand, within Echvi_2598at 3080.640 kb on + strand, within Echvi_2598at 3080.645 kb on - strand, within Echvi_2598at 3080.661 kb on - strand, within Echvi_2598at 3080.698 kb on + strand, within Echvi_2598at 3080.719 kb on - strand, within Echvi_2598at 3080.762 kb on + strand, within Echvi_2598

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,077,833 + Echvi_2594 0.61 +0.2
3,077,852 + Echvi_2594 0.64 +1.2
3,077,853 - Echvi_2594 0.64 -0.6
3,077,881 + Echvi_2594 0.69 +0.9
3,077,906 + Echvi_2594 0.73 -0.1
3,077,906 + Echvi_2594 0.73 +0.7
3,077,936 + Echvi_2594 0.78 +0.4
3,078,114 - +1.7
3,078,179 - Echvi_2595 0.14 +0.2
3,078,309 + Echvi_2595 0.32 +0.8
3,078,343 + Echvi_2595 0.37 +1.3
3,078,409 + Echvi_2595 0.46 -1.4
3,078,409 + Echvi_2595 0.46 +0.5
3,078,409 + Echvi_2595 0.46 +1.0
3,078,410 - Echvi_2595 0.46 +1.0
3,078,420 - Echvi_2595 0.47 +1.1
3,078,421 + Echvi_2595 0.47 +0.1
3,078,421 + Echvi_2595 0.47 -0.0
3,078,421 + Echvi_2595 0.47 -0.3
3,078,421 + Echvi_2595 0.47 +0.1
3,078,422 - Echvi_2595 0.47 +0.1
3,078,431 + Echvi_2595 0.49 +0.5
3,078,431 + Echvi_2595 0.49 +1.7
3,078,431 + Echvi_2595 0.49 +0.2
3,078,432 - Echvi_2595 0.49 -1.2
3,078,432 - Echvi_2595 0.49 +1.0
3,078,432 - Echvi_2595 0.49 +2.4
3,078,432 - Echvi_2595 0.49 +0.3
3,078,432 - Echvi_2595 0.49 +0.6
3,078,436 - Echvi_2595 0.49 -2.3
3,078,460 - Echvi_2595 0.53 +1.1
3,078,523 + Echvi_2595 0.61 -0.1
3,078,524 - Echvi_2595 0.61 -0.2
3,078,527 + Echvi_2595 0.62 -1.2
3,078,527 + Echvi_2595 0.62 -0.2
3,078,527 + Echvi_2595 0.62 -0.4
3,078,527 + Echvi_2595 0.62 -0.0
3,078,549 + Echvi_2595 0.65 -1.3
3,078,550 - Echvi_2595 0.65 -0.9
3,078,550 - Echvi_2595 0.65 +2.4
3,078,575 - Echvi_2595 0.68 +0.5
3,078,634 + Echvi_2595 0.76 +0.3
3,078,672 + Echvi_2595 0.81 -0.3
3,078,672 + Echvi_2595 0.81 -1.0
3,078,673 - Echvi_2595 0.81 -1.5
3,078,690 + Echvi_2595 0.84 +0.1
3,078,693 - Echvi_2595 0.84 +2.2
3,078,705 - Echvi_2595 0.86 +0.1
3,078,705 - Echvi_2595 0.86 -0.2
3,078,727 + Echvi_2595 0.89 +1.4
3,078,731 + Echvi_2595 0.89 -1.3
3,078,732 - Echvi_2595 0.89 +0.1
3,078,744 + -0.1
3,078,745 - +2.0
3,078,767 + +2.1
3,078,779 + +0.2
3,078,810 + -1.6
3,078,863 - -0.5
3,078,864 + -1.1
3,078,864 + +0.2
3,078,864 + -0.1
3,078,918 + Echvi_2596 0.10 -0.9
3,078,933 + Echvi_2596 0.12 +0.6
3,078,960 + Echvi_2596 0.14 -2.1
3,079,057 + Echvi_2596 0.24 -0.9
3,079,065 + Echvi_2596 0.25 +1.2
3,079,084 - Echvi_2596 0.27 +0.0
3,079,106 + Echvi_2596 0.29 +1.3
3,079,146 + Echvi_2596 0.33 +0.9
3,079,146 + Echvi_2596 0.33 +0.3
3,079,146 + Echvi_2596 0.33 -0.9
3,079,146 + Echvi_2596 0.33 +0.1
3,079,146 + Echvi_2596 0.33 -0.5
3,079,147 - Echvi_2596 0.33 +1.0
3,079,147 - Echvi_2596 0.33 +1.6
3,079,147 - Echvi_2596 0.33 -0.1
3,079,148 + Echvi_2596 0.33 -2.4
3,079,159 - Echvi_2596 0.34 -2.2
3,079,215 + Echvi_2596 0.40 +1.8
3,079,215 + Echvi_2596 0.40 +0.4
3,079,216 - Echvi_2596 0.40 -0.6
3,079,216 - Echvi_2596 0.40 +0.6
3,079,217 + Echvi_2596 0.40 +0.3
3,079,218 - Echvi_2596 0.40 +1.1
3,079,218 - Echvi_2596 0.40 -0.3
3,079,236 + Echvi_2596 0.42 -0.8
3,079,236 + Echvi_2596 0.42 +0.9
3,079,236 + Echvi_2596 0.42 +1.4
3,079,236 + Echvi_2596 0.42 -0.0
3,079,237 - Echvi_2596 0.42 +0.4
3,079,237 - Echvi_2596 0.42 -0.2
3,079,249 - Echvi_2596 0.44 -0.2
3,079,263 + Echvi_2596 0.45 +1.3
3,079,282 - Echvi_2596 0.47 +0.0
3,079,282 - Echvi_2596 0.47 +1.0
3,079,284 + Echvi_2596 0.47 +1.5
3,079,284 + Echvi_2596 0.47 +1.4
3,079,285 - Echvi_2596 0.47 -0.3
3,079,285 - Echvi_2596 0.47 +0.3
3,079,285 - Echvi_2596 0.47 +1.7
3,079,285 - Echvi_2596 0.47 +0.1
3,079,304 - Echvi_2596 0.49 +0.3
3,079,315 + Echvi_2596 0.50 -1.3
3,079,315 + Echvi_2596 0.50 -1.3
3,079,344 + Echvi_2596 0.53 +0.7
3,079,345 - Echvi_2596 0.53 +0.3
3,079,391 + Echvi_2596 0.58 -2.9
3,079,392 - Echvi_2596 0.58 -0.5
3,079,392 - Echvi_2596 0.58 +1.8
3,079,394 - Echvi_2596 0.58 +0.0
3,079,452 + Echvi_2596 0.64 -0.2
3,079,479 - Echvi_2596 0.67 -0.5
3,079,521 - Echvi_2596 0.71 -1.0
3,079,546 - Echvi_2596 0.73 +0.8
3,079,566 + Echvi_2596 0.75 -0.6
3,079,593 - Echvi_2596 0.78 +0.7
3,079,645 - Echvi_2596 0.83 -1.6
3,079,645 - Echvi_2596 0.83 -0.1
3,079,645 - Echvi_2596 0.83 +0.8
3,079,668 - Echvi_2596 0.86 -0.6
3,079,684 - Echvi_2596 0.87 +0.3
3,079,694 + Echvi_2596 0.88 +1.9
3,079,722 - +0.3
3,079,751 + -1.1
3,079,782 - -0.0
3,079,785 + +0.2
3,079,786 - +0.9
3,079,788 - -0.5
3,079,788 - +1.1
3,079,800 - +1.2
3,079,831 + -0.2
3,079,832 - +0.4
3,079,832 - +0.5
3,079,866 + -2.4
3,079,892 + Echvi_2597 0.11 -0.0
3,079,893 - Echvi_2597 0.12 +0.2
3,079,965 - Echvi_2597 0.22 -1.6
3,079,970 + Echvi_2597 0.23 -0.4
3,080,013 + Echvi_2597 0.29 -2.1
3,080,051 - Echvi_2597 0.34 -0.5
3,080,094 - Echvi_2597 0.40 -0.3
3,080,094 - Echvi_2597 0.40 -0.8
3,080,097 + Echvi_2597 0.41 -1.2
3,080,098 - Echvi_2597 0.41 +0.8
3,080,098 - Echvi_2597 0.41 -0.2
3,080,120 - Echvi_2597 0.44 -0.7
3,080,137 - +2.4
3,080,140 + Echvi_2597 0.47 -0.1
3,080,141 - Echvi_2597 0.47 +0.1
3,080,235 - Echvi_2597 0.60 +0.6
3,080,255 - Echvi_2597 0.63 -0.8
3,080,287 + Echvi_2597 0.68 -1.1
3,080,288 - Echvi_2597 0.68 +1.3
3,080,309 - Echvi_2597 0.71 -0.6
3,080,309 - Echvi_2597 0.71 +0.1
3,080,309 - Echvi_2597 0.71 -1.4
3,080,315 + Echvi_2597 0.72 +0.4
3,080,315 + Echvi_2597 0.72 +2.0
3,080,316 - Echvi_2597 0.72 +1.1
3,080,316 - Echvi_2597 0.72 +0.0
3,080,333 + Echvi_2597 0.74 +0.5
3,080,337 - Echvi_2597 0.75 +1.5
3,080,375 - Echvi_2597 0.80 -0.3
3,080,396 + Echvi_2597 0.83 +1.1
3,080,396 + Echvi_2597 0.83 +1.9
3,080,396 + Echvi_2597 0.83 -0.9
3,080,397 - Echvi_2597 0.83 +0.7
3,080,397 - Echvi_2597 0.83 +0.2
3,080,397 - Echvi_2597 0.83 -0.1
3,080,492 - +0.2
3,080,551 - -0.4
3,080,551 - +0.4
3,080,551 - +0.5
3,080,551 - +0.3
3,080,592 - Echvi_2598 0.12 +0.3
3,080,596 - Echvi_2598 0.13 -0.8
3,080,640 + Echvi_2598 0.18 -1.1
3,080,645 - Echvi_2598 0.18 +0.1
3,080,661 - Echvi_2598 0.20 -0.6
3,080,698 + Echvi_2598 0.24 +0.3
3,080,719 - Echvi_2598 0.27 +0.2
3,080,762 + Echvi_2598 0.32 -0.7

Or see this region's nucleotide sequence