Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2487

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2485 and Echvi_2486 are separated by 259 nucleotidesEchvi_2486 and Echvi_2487 are separated by 68 nucleotidesEchvi_2487 and Echvi_2488 are separated by 203 nucleotides Echvi_2485: Echvi_2485 - AraC-type DNA-binding domain-containing proteins, at 2,952,993 to 2,954,081 _2485 Echvi_2486: Echvi_2486 - hypothetical protein, at 2,954,341 to 2,954,937 _2486 Echvi_2487: Echvi_2487 - Fatty acid desaturase, at 2,955,006 to 2,956,082 _2487 Echvi_2488: Echvi_2488 - hypothetical protein, at 2,956,286 to 2,956,999 _2488 Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2954.008 kb on + strandat 2954.023 kb on + strandat 2954.067 kb on + strandat 2954.084 kb on + strandat 2954.084 kb on + strandat 2954.085 kb on - strandat 2954.085 kb on - strandat 2954.085 kb on - strandat 2954.095 kb on + strandat 2954.104 kb on - strandat 2954.152 kb on + strandat 2954.172 kb on + strandat 2954.172 kb on + strandat 2954.173 kb on - strandat 2954.173 kb on - strandat 2954.173 kb on - strandat 2954.173 kb on - strandat 2954.175 kb on + strandat 2954.180 kb on - strandat 2954.196 kb on + strandat 2954.213 kb on + strandat 2954.224 kb on + strandat 2954.224 kb on + strandat 2954.224 kb on + strandat 2954.224 kb on + strandat 2954.224 kb on + strandat 2954.225 kb on - strandat 2954.260 kb on - strandat 2954.286 kb on - strandat 2954.300 kb on + strandat 2954.300 kb on + strandat 2954.301 kb on - strandat 2954.333 kb on + strandat 2954.340 kb on + strandat 2954.340 kb on + strandat 2954.340 kb on + strandat 2954.341 kb on - strandat 2954.344 kb on + strandat 2954.344 kb on + strandat 2954.345 kb on - strandat 2954.345 kb on - strandat 2954.348 kb on + strandat 2954.376 kb on + strandat 2954.377 kb on - strandat 2954.377 kb on - strandat 2954.380 kb on - strandat 2954.434 kb on + strand, within Echvi_2486at 2954.435 kb on - strand, within Echvi_2486at 2954.437 kb on + strand, within Echvi_2486at 2954.445 kb on - strand, within Echvi_2486at 2954.528 kb on - strand, within Echvi_2486at 2954.531 kb on + strand, within Echvi_2486at 2954.531 kb on + strand, within Echvi_2486at 2954.531 kb on + strand, within Echvi_2486at 2954.532 kb on - strand, within Echvi_2486at 2954.532 kb on - strand, within Echvi_2486at 2954.532 kb on - strand, within Echvi_2486at 2954.532 kb on - strand, within Echvi_2486at 2954.576 kb on - strand, within Echvi_2486at 2954.581 kb on - strand, within Echvi_2486at 2954.609 kb on - strand, within Echvi_2486at 2954.609 kb on - strand, within Echvi_2486at 2954.611 kb on - strand, within Echvi_2486at 2954.644 kb on + strand, within Echvi_2486at 2954.644 kb on + strand, within Echvi_2486at 2954.668 kb on + strand, within Echvi_2486at 2954.668 kb on + strand, within Echvi_2486at 2954.668 kb on + strand, within Echvi_2486at 2954.778 kb on + strand, within Echvi_2486at 2954.778 kb on + strand, within Echvi_2486at 2954.778 kb on + strand, within Echvi_2486at 2954.779 kb on - strand, within Echvi_2486at 2954.826 kb on + strand, within Echvi_2486at 2954.827 kb on - strand, within Echvi_2486at 2954.827 kb on - strand, within Echvi_2486at 2954.827 kb on - strand, within Echvi_2486at 2954.842 kb on - strand, within Echvi_2486at 2955.008 kb on - strandat 2955.028 kb on - strandat 2955.077 kb on + strandat 2955.079 kb on + strandat 2955.080 kb on - strandat 2955.089 kb on + strandat 2955.089 kb on + strandat 2955.133 kb on + strand, within Echvi_2487at 2955.183 kb on - strand, within Echvi_2487at 2955.300 kb on - strand, within Echvi_2487at 2955.376 kb on + strand, within Echvi_2487at 2955.376 kb on + strand, within Echvi_2487at 2955.377 kb on - strand, within Echvi_2487at 2955.377 kb on - strand, within Echvi_2487at 2955.440 kb on + strand, within Echvi_2487at 2955.440 kb on + strand, within Echvi_2487at 2955.441 kb on - strand, within Echvi_2487at 2955.441 kb on - strand, within Echvi_2487at 2955.441 kb on - strand, within Echvi_2487at 2955.442 kb on + strand, within Echvi_2487at 2955.442 kb on + strand, within Echvi_2487at 2955.442 kb on + strand, within Echvi_2487at 2955.443 kb on - strand, within Echvi_2487at 2955.443 kb on - strand, within Echvi_2487at 2955.443 kb on - strand, within Echvi_2487at 2955.443 kb on - strand, within Echvi_2487at 2955.445 kb on + strand, within Echvi_2487at 2955.446 kb on - strand, within Echvi_2487at 2955.446 kb on - strand, within Echvi_2487at 2955.446 kb on - strand, within Echvi_2487at 2955.446 kb on - strand, within Echvi_2487at 2955.465 kb on + strand, within Echvi_2487at 2955.466 kb on - strand, within Echvi_2487at 2955.466 kb on - strand, within Echvi_2487at 2955.476 kb on - strand, within Echvi_2487at 2955.566 kb on + strand, within Echvi_2487at 2955.567 kb on - strand, within Echvi_2487at 2955.576 kb on + strand, within Echvi_2487at 2955.693 kb on - strand, within Echvi_2487at 2955.694 kb on + strand, within Echvi_2487at 2955.694 kb on + strand, within Echvi_2487at 2955.694 kb on + strand, within Echvi_2487at 2955.694 kb on + strand, within Echvi_2487at 2955.695 kb on - strand, within Echvi_2487at 2955.698 kb on + strand, within Echvi_2487at 2955.698 kb on + strand, within Echvi_2487at 2955.698 kb on + strand, within Echvi_2487at 2955.699 kb on - strand, within Echvi_2487at 2955.733 kb on + strand, within Echvi_2487at 2955.734 kb on - strand, within Echvi_2487at 2955.756 kb on - strand, within Echvi_2487at 2955.777 kb on - strand, within Echvi_2487at 2955.794 kb on + strand, within Echvi_2487at 2955.799 kb on + strand, within Echvi_2487at 2955.799 kb on + strand, within Echvi_2487at 2955.800 kb on - strand, within Echvi_2487at 2955.884 kb on + strand, within Echvi_2487at 2955.885 kb on - strand, within Echvi_2487at 2955.897 kb on + strand, within Echvi_2487at 2955.927 kb on + strand, within Echvi_2487at 2955.928 kb on - strand, within Echvi_2487at 2955.929 kb on + strand, within Echvi_2487at 2955.930 kb on - strand, within Echvi_2487at 2955.943 kb on + strand, within Echvi_2487at 2955.943 kb on + strand, within Echvi_2487at 2955.944 kb on - strand, within Echvi_2487at 2955.944 kb on - strand, within Echvi_2487at 2955.945 kb on + strand, within Echvi_2487at 2955.946 kb on - strand, within Echvi_2487at 2956.026 kb on - strandat 2956.078 kb on + strandat 2956.082 kb on + strandat 2956.083 kb on - strandat 2956.083 kb on - strandat 2956.083 kb on - strandat 2956.110 kb on + strandat 2956.117 kb on - strandat 2956.173 kb on + strandat 2956.173 kb on + strandat 2956.173 kb on + strandat 2956.174 kb on - strandat 2956.241 kb on - strandat 2956.251 kb on - strandat 2956.296 kb on + strandat 2956.296 kb on + strandat 2956.296 kb on + strandat 2956.297 kb on - strandat 2956.349 kb on + strandat 2956.390 kb on + strand, within Echvi_2488at 2956.393 kb on - strand, within Echvi_2488at 2956.466 kb on + strand, within Echvi_2488at 2956.467 kb on - strand, within Echvi_2488at 2956.481 kb on + strand, within Echvi_2488at 2956.481 kb on + strand, within Echvi_2488at 2956.482 kb on - strand, within Echvi_2488at 2956.487 kb on - strand, within Echvi_2488at 2956.496 kb on + strand, within Echvi_2488at 2956.499 kb on + strand, within Echvi_2488at 2956.500 kb on - strand, within Echvi_2488at 2956.501 kb on + strand, within Echvi_2488at 2956.501 kb on + strand, within Echvi_2488at 2956.501 kb on + strand, within Echvi_2488at 2956.501 kb on + strand, within Echvi_2488at 2956.502 kb on - strand, within Echvi_2488at 2956.525 kb on - strand, within Echvi_2488at 2956.537 kb on - strand, within Echvi_2488at 2956.581 kb on - strand, within Echvi_2488at 2956.581 kb on - strand, within Echvi_2488at 2956.591 kb on + strand, within Echvi_2488at 2956.592 kb on - strand, within Echvi_2488at 2956.596 kb on + strand, within Echvi_2488at 2956.600 kb on + strand, within Echvi_2488at 2956.601 kb on - strand, within Echvi_2488at 2956.676 kb on + strand, within Echvi_2488at 2956.828 kb on - strand, within Echvi_2488at 2956.854 kb on + strand, within Echvi_2488at 2956.854 kb on + strand, within Echvi_2488at 2956.855 kb on - strand, within Echvi_2488at 2956.995 kb on + strandat 2957.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,954,008 + +0.9
2,954,023 + +1.9
2,954,067 + -0.1
2,954,084 + +0.0
2,954,084 + -0.6
2,954,085 - +0.2
2,954,085 - -0.9
2,954,085 - -0.2
2,954,095 + -0.3
2,954,104 - -2.5
2,954,152 + +0.7
2,954,172 + +0.1
2,954,172 + -1.6
2,954,173 - -0.6
2,954,173 - +1.1
2,954,173 - +0.1
2,954,173 - -0.0
2,954,175 + +0.3
2,954,180 - +0.1
2,954,196 + +1.9
2,954,213 + +1.7
2,954,224 + -0.0
2,954,224 + -0.7
2,954,224 + -0.5
2,954,224 + -1.0
2,954,224 + +2.4
2,954,225 - +0.2
2,954,260 - -0.7
2,954,286 - -1.7
2,954,300 + +1.0
2,954,300 + -0.2
2,954,301 - -0.1
2,954,333 + -0.5
2,954,340 + +3.7
2,954,340 + +1.1
2,954,340 + -1.6
2,954,341 - +0.5
2,954,344 + -1.4
2,954,344 + -0.2
2,954,345 - +0.3
2,954,345 - -1.9
2,954,348 + +0.9
2,954,376 + +0.6
2,954,377 - +1.4
2,954,377 - -0.1
2,954,380 - -2.8
2,954,434 + Echvi_2486 0.16 +0.4
2,954,435 - Echvi_2486 0.16 +0.3
2,954,437 + Echvi_2486 0.16 -0.3
2,954,445 - Echvi_2486 0.17 -0.7
2,954,528 - Echvi_2486 0.31 +1.2
2,954,531 + Echvi_2486 0.32 +0.2
2,954,531 + Echvi_2486 0.32 -1.2
2,954,531 + Echvi_2486 0.32 -0.4
2,954,532 - Echvi_2486 0.32 +1.0
2,954,532 - Echvi_2486 0.32 -0.5
2,954,532 - Echvi_2486 0.32 +0.1
2,954,532 - Echvi_2486 0.32 +1.9
2,954,576 - Echvi_2486 0.39 +0.7
2,954,581 - Echvi_2486 0.40 +0.2
2,954,609 - Echvi_2486 0.45 +0.8
2,954,609 - Echvi_2486 0.45 -0.5
2,954,611 - Echvi_2486 0.45 -0.1
2,954,644 + Echvi_2486 0.51 -0.1
2,954,644 + Echvi_2486 0.51 +1.5
2,954,668 + Echvi_2486 0.55 +2.4
2,954,668 + Echvi_2486 0.55 -1.1
2,954,668 + Echvi_2486 0.55 +1.2
2,954,778 + Echvi_2486 0.73 -0.2
2,954,778 + Echvi_2486 0.73 +2.3
2,954,778 + Echvi_2486 0.73 +0.1
2,954,779 - Echvi_2486 0.73 -0.4
2,954,826 + Echvi_2486 0.81 +0.8
2,954,827 - Echvi_2486 0.81 -2.6
2,954,827 - Echvi_2486 0.81 -0.3
2,954,827 - Echvi_2486 0.81 -0.9
2,954,842 - Echvi_2486 0.84 -0.3
2,955,008 - +0.1
2,955,028 - +0.4
2,955,077 + -0.6
2,955,079 + +0.4
2,955,080 - +0.0
2,955,089 + +0.5
2,955,089 + -0.1
2,955,133 + Echvi_2487 0.12 -0.9
2,955,183 - Echvi_2487 0.16 +0.9
2,955,300 - Echvi_2487 0.27 -0.8
2,955,376 + Echvi_2487 0.34 -1.6
2,955,376 + Echvi_2487 0.34 -2.5
2,955,377 - Echvi_2487 0.34 -0.8
2,955,377 - Echvi_2487 0.34 -1.3
2,955,440 + Echvi_2487 0.40 +0.3
2,955,440 + Echvi_2487 0.40 +0.1
2,955,441 - Echvi_2487 0.40 +0.6
2,955,441 - Echvi_2487 0.40 +0.8
2,955,441 - Echvi_2487 0.40 -1.3
2,955,442 + Echvi_2487 0.40 -0.9
2,955,442 + Echvi_2487 0.40 +0.2
2,955,442 + Echvi_2487 0.40 -1.6
2,955,443 - Echvi_2487 0.41 -0.0
2,955,443 - Echvi_2487 0.41 -2.2
2,955,443 - Echvi_2487 0.41 +0.4
2,955,443 - Echvi_2487 0.41 -0.8
2,955,445 + Echvi_2487 0.41 +0.9
2,955,446 - Echvi_2487 0.41 +0.5
2,955,446 - Echvi_2487 0.41 +1.3
2,955,446 - Echvi_2487 0.41 +1.1
2,955,446 - Echvi_2487 0.41 +0.4
2,955,465 + Echvi_2487 0.43 +0.6
2,955,466 - Echvi_2487 0.43 -2.0
2,955,466 - Echvi_2487 0.43 +0.3
2,955,476 - Echvi_2487 0.44 -0.5
2,955,566 + Echvi_2487 0.52 +0.8
2,955,567 - Echvi_2487 0.52 -0.6
2,955,576 + Echvi_2487 0.53 +1.4
2,955,693 - Echvi_2487 0.64 -2.5
2,955,694 + Echvi_2487 0.64 +1.0
2,955,694 + Echvi_2487 0.64 -2.0
2,955,694 + Echvi_2487 0.64 +0.3
2,955,694 + Echvi_2487 0.64 -0.6
2,955,695 - Echvi_2487 0.64 -1.1
2,955,698 + Echvi_2487 0.64 -0.3
2,955,698 + Echvi_2487 0.64 -1.1
2,955,698 + Echvi_2487 0.64 -2.0
2,955,699 - Echvi_2487 0.64 +0.3
2,955,733 + Echvi_2487 0.68 +0.9
2,955,734 - Echvi_2487 0.68 +0.4
2,955,756 - Echvi_2487 0.70 -0.0
2,955,777 - Echvi_2487 0.72 -0.6
2,955,794 + Echvi_2487 0.73 -1.5
2,955,799 + Echvi_2487 0.74 +0.5
2,955,799 + Echvi_2487 0.74 -0.8
2,955,800 - Echvi_2487 0.74 -0.5
2,955,884 + Echvi_2487 0.82 +1.7
2,955,885 - Echvi_2487 0.82 +0.3
2,955,897 + Echvi_2487 0.83 -1.1
2,955,927 + Echvi_2487 0.86 +0.0
2,955,928 - Echvi_2487 0.86 -0.1
2,955,929 + Echvi_2487 0.86 +2.2
2,955,930 - Echvi_2487 0.86 -1.7
2,955,943 + Echvi_2487 0.87 -2.1
2,955,943 + Echvi_2487 0.87 -0.4
2,955,944 - Echvi_2487 0.87 +0.6
2,955,944 - Echvi_2487 0.87 +0.7
2,955,945 + Echvi_2487 0.87 -0.4
2,955,946 - Echvi_2487 0.87 +0.2
2,956,026 - +1.0
2,956,078 + +0.1
2,956,082 + +0.7
2,956,083 - +0.4
2,956,083 - +0.3
2,956,083 - -0.7
2,956,110 + -1.8
2,956,117 - -0.6
2,956,173 + -0.9
2,956,173 + -0.6
2,956,173 + +0.9
2,956,174 - -1.9
2,956,241 - -0.6
2,956,251 - -0.6
2,956,296 + +0.3
2,956,296 + +1.3
2,956,296 + +1.0
2,956,297 - -1.2
2,956,349 + +0.3
2,956,390 + Echvi_2488 0.15 -0.4
2,956,393 - Echvi_2488 0.15 -1.1
2,956,466 + Echvi_2488 0.25 +0.4
2,956,467 - Echvi_2488 0.25 -0.4
2,956,481 + Echvi_2488 0.27 +0.1
2,956,481 + Echvi_2488 0.27 +0.2
2,956,482 - Echvi_2488 0.27 -1.5
2,956,487 - Echvi_2488 0.28 -0.8
2,956,496 + Echvi_2488 0.29 +0.7
2,956,499 + Echvi_2488 0.30 +0.0
2,956,500 - Echvi_2488 0.30 +0.1
2,956,501 + Echvi_2488 0.30 -0.6
2,956,501 + Echvi_2488 0.30 -0.0
2,956,501 + Echvi_2488 0.30 +1.9
2,956,501 + Echvi_2488 0.30 -1.1
2,956,502 - Echvi_2488 0.30 +0.6
2,956,525 - Echvi_2488 0.33 -0.1
2,956,537 - Echvi_2488 0.35 -1.3
2,956,581 - Echvi_2488 0.41 -1.4
2,956,581 - Echvi_2488 0.41 -0.4
2,956,591 + Echvi_2488 0.43 -0.0
2,956,592 - Echvi_2488 0.43 -0.3
2,956,596 + Echvi_2488 0.43 +0.1
2,956,600 + Echvi_2488 0.44 -0.8
2,956,601 - Echvi_2488 0.44 +0.1
2,956,676 + Echvi_2488 0.55 -1.6
2,956,828 - Echvi_2488 0.76 -0.9
2,956,854 + Echvi_2488 0.80 -0.1
2,956,854 + Echvi_2488 0.80 -2.0
2,956,855 - Echvi_2488 0.80 +0.4
2,956,995 + -0.4
2,957,020 - -0.8

Or see this region's nucleotide sequence