Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1506

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1504 and Echvi_1505 are separated by 16 nucleotidesEchvi_1505 and Echvi_1506 are separated by 1 nucleotidesEchvi_1506 and Echvi_1507 are separated by 66 nucleotides Echvi_1504: Echvi_1504 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 1,726,757 to 1,728,241 _1504 Echvi_1505: Echvi_1505 - Uncharacterized conserved protein, at 1,728,258 to 1,728,947 _1505 Echvi_1506: Echvi_1506 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,728,949 to 1,729,434 _1506 Echvi_1507: Echvi_1507 - Predicted Zn-dependent peptidases, at 1,729,501 to 1,730,742 _1507 Position (kb) 1728 1729 1730Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1727.957 kb on + strand, within Echvi_1504at 1727.957 kb on + strand, within Echvi_1504at 1727.958 kb on - strand, within Echvi_1504at 1728.005 kb on + strand, within Echvi_1504at 1728.005 kb on + strand, within Echvi_1504at 1728.007 kb on + strand, within Echvi_1504at 1728.008 kb on - strand, within Echvi_1504at 1728.023 kb on + strand, within Echvi_1504at 1728.023 kb on + strand, within Echvi_1504at 1728.023 kb on + strand, within Echvi_1504at 1728.030 kb on + strand, within Echvi_1504at 1728.031 kb on - strand, within Echvi_1504at 1728.031 kb on - strand, within Echvi_1504at 1728.031 kb on - strand, within Echvi_1504at 1728.094 kb on + strandat 1728.095 kb on - strandat 1728.095 kb on - strandat 1728.095 kb on - strandat 1728.114 kb on - strandat 1728.210 kb on - strandat 1728.215 kb on + strandat 1728.216 kb on - strandat 1728.235 kb on + strandat 1728.259 kb on + strandat 1728.373 kb on + strand, within Echvi_1505at 1728.373 kb on + strand, within Echvi_1505at 1728.438 kb on + strand, within Echvi_1505at 1728.439 kb on - strand, within Echvi_1505at 1728.488 kb on + strand, within Echvi_1505at 1728.495 kb on + strand, within Echvi_1505at 1728.495 kb on + strand, within Echvi_1505at 1728.495 kb on + strand, within Echvi_1505at 1728.496 kb on - strand, within Echvi_1505at 1728.496 kb on - strand, within Echvi_1505at 1728.496 kb on - strand, within Echvi_1505at 1728.627 kb on - strand, within Echvi_1505at 1728.627 kb on - strand, within Echvi_1505at 1728.635 kb on - strand, within Echvi_1505at 1728.638 kb on + strand, within Echvi_1505at 1728.638 kb on + strand, within Echvi_1505at 1728.638 kb on + strand, within Echvi_1505at 1728.638 kb on + strand, within Echvi_1505at 1728.639 kb on - strand, within Echvi_1505at 1728.639 kb on - strand, within Echvi_1505at 1728.650 kb on - strand, within Echvi_1505at 1728.683 kb on + strand, within Echvi_1505at 1728.683 kb on + strand, within Echvi_1505at 1728.684 kb on - strand, within Echvi_1505at 1728.684 kb on - strand, within Echvi_1505at 1728.684 kb on - strand, within Echvi_1505at 1728.688 kb on + strand, within Echvi_1505at 1728.872 kb on - strand, within Echvi_1505at 1728.872 kb on - strand, within Echvi_1505at 1728.961 kb on - strandat 1729.446 kb on - strandat 1729.482 kb on + strandat 1729.523 kb on + strandat 1729.524 kb on - strandat 1729.608 kb on - strandat 1729.646 kb on + strand, within Echvi_1507at 1729.649 kb on + strand, within Echvi_1507at 1729.650 kb on - strand, within Echvi_1507at 1729.692 kb on - strand, within Echvi_1507at 1729.771 kb on + strand, within Echvi_1507at 1729.771 kb on + strand, within Echvi_1507at 1729.867 kb on - strand, within Echvi_1507at 1729.869 kb on - strand, within Echvi_1507at 1729.869 kb on - strand, within Echvi_1507at 1729.891 kb on - strand, within Echvi_1507at 1729.973 kb on + strand, within Echvi_1507at 1729.998 kb on + strand, within Echvi_1507at 1729.998 kb on + strand, within Echvi_1507at 1729.999 kb on - strand, within Echvi_1507at 1730.003 kb on + strand, within Echvi_1507at 1730.003 kb on + strand, within Echvi_1507at 1730.004 kb on - strand, within Echvi_1507at 1730.004 kb on - strand, within Echvi_1507at 1730.004 kb on - strand, within Echvi_1507at 1730.004 kb on - strand, within Echvi_1507at 1730.025 kb on + strand, within Echvi_1507at 1730.161 kb on + strand, within Echvi_1507at 1730.162 kb on - strand, within Echvi_1507at 1730.208 kb on - strand, within Echvi_1507at 1730.213 kb on + strand, within Echvi_1507at 1730.214 kb on - strand, within Echvi_1507at 1730.214 kb on - strand, within Echvi_1507at 1730.293 kb on + strand, within Echvi_1507at 1730.293 kb on + strand, within Echvi_1507at 1730.293 kb on + strand, within Echvi_1507at 1730.293 kb on + strand, within Echvi_1507at 1730.294 kb on - strand, within Echvi_1507at 1730.294 kb on - strand, within Echvi_1507at 1730.294 kb on - strand, within Echvi_1507at 1730.294 kb on - strand, within Echvi_1507at 1730.300 kb on + strand, within Echvi_1507at 1730.301 kb on - strand, within Echvi_1507at 1730.336 kb on + strand, within Echvi_1507at 1730.337 kb on - strand, within Echvi_1507at 1730.352 kb on - strand, within Echvi_1507at 1730.361 kb on + strand, within Echvi_1507at 1730.362 kb on - strand, within Echvi_1507

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,727,957 + Echvi_1504 0.81 -2.4
1,727,957 + Echvi_1504 0.81 -0.7
1,727,958 - Echvi_1504 0.81 -0.1
1,728,005 + Echvi_1504 0.84 -0.5
1,728,005 + Echvi_1504 0.84 -0.8
1,728,007 + Echvi_1504 0.84 +0.4
1,728,008 - Echvi_1504 0.84 -1.0
1,728,023 + Echvi_1504 0.85 -0.8
1,728,023 + Echvi_1504 0.85 -1.0
1,728,023 + Echvi_1504 0.85 +0.5
1,728,030 + Echvi_1504 0.86 -0.1
1,728,031 - Echvi_1504 0.86 -0.3
1,728,031 - Echvi_1504 0.86 -1.3
1,728,031 - Echvi_1504 0.86 -0.2
1,728,094 + -0.8
1,728,095 - +1.9
1,728,095 - -0.4
1,728,095 - +0.0
1,728,114 - +0.2
1,728,210 - +1.4
1,728,215 + +1.2
1,728,216 - +0.1
1,728,235 + +0.7
1,728,259 + +0.1
1,728,373 + Echvi_1505 0.17 +1.2
1,728,373 + Echvi_1505 0.17 +1.1
1,728,438 + Echvi_1505 0.26 -0.3
1,728,439 - Echvi_1505 0.26 +0.2
1,728,488 + Echvi_1505 0.33 +1.0
1,728,495 + Echvi_1505 0.34 -0.1
1,728,495 + Echvi_1505 0.34 -0.9
1,728,495 + Echvi_1505 0.34 -0.4
1,728,496 - Echvi_1505 0.34 -2.3
1,728,496 - Echvi_1505 0.34 -0.6
1,728,496 - Echvi_1505 0.34 -0.7
1,728,627 - Echvi_1505 0.53 +0.4
1,728,627 - Echvi_1505 0.53 +1.6
1,728,635 - Echvi_1505 0.55 -2.1
1,728,638 + Echvi_1505 0.55 -1.5
1,728,638 + Echvi_1505 0.55 -0.1
1,728,638 + Echvi_1505 0.55 -1.7
1,728,638 + Echvi_1505 0.55 +1.5
1,728,639 - Echvi_1505 0.55 +0.4
1,728,639 - Echvi_1505 0.55 +1.3
1,728,650 - Echvi_1505 0.57 -0.0
1,728,683 + Echvi_1505 0.62 +0.7
1,728,683 + Echvi_1505 0.62 -1.1
1,728,684 - Echvi_1505 0.62 +0.7
1,728,684 - Echvi_1505 0.62 +0.2
1,728,684 - Echvi_1505 0.62 -0.3
1,728,688 + Echvi_1505 0.62 -0.6
1,728,872 - Echvi_1505 0.89 +0.1
1,728,872 - Echvi_1505 0.89 +0.7
1,728,961 - +0.6
1,729,446 - +0.3
1,729,482 + +0.4
1,729,523 + +0.6
1,729,524 - -0.8
1,729,608 - -1.9
1,729,646 + Echvi_1507 0.12 -0.6
1,729,649 + Echvi_1507 0.12 +0.2
1,729,650 - Echvi_1507 0.12 -0.6
1,729,692 - Echvi_1507 0.15 -1.2
1,729,771 + Echvi_1507 0.22 +0.4
1,729,771 + Echvi_1507 0.22 +0.7
1,729,867 - Echvi_1507 0.29 +0.2
1,729,869 - Echvi_1507 0.30 +0.2
1,729,869 - Echvi_1507 0.30 +0.5
1,729,891 - Echvi_1507 0.31 -0.4
1,729,973 + Echvi_1507 0.38 -0.3
1,729,998 + Echvi_1507 0.40 +0.3
1,729,998 + Echvi_1507 0.40 -0.6
1,729,999 - Echvi_1507 0.40 +1.0
1,730,003 + Echvi_1507 0.40 +0.6
1,730,003 + Echvi_1507 0.40 -0.0
1,730,004 - Echvi_1507 0.40 -0.4
1,730,004 - Echvi_1507 0.40 -1.6
1,730,004 - Echvi_1507 0.40 -1.5
1,730,004 - Echvi_1507 0.40 -0.9
1,730,025 + Echvi_1507 0.42 +1.0
1,730,161 + Echvi_1507 0.53 +3.1
1,730,162 - Echvi_1507 0.53 +0.0
1,730,208 - Echvi_1507 0.57 +2.0
1,730,213 + Echvi_1507 0.57 -0.0
1,730,214 - Echvi_1507 0.57 +0.7
1,730,214 - Echvi_1507 0.57 -0.3
1,730,293 + Echvi_1507 0.64 -0.6
1,730,293 + Echvi_1507 0.64 -0.8
1,730,293 + Echvi_1507 0.64 +1.6
1,730,293 + Echvi_1507 0.64 +0.7
1,730,294 - Echvi_1507 0.64 -2.2
1,730,294 - Echvi_1507 0.64 -0.8
1,730,294 - Echvi_1507 0.64 +0.9
1,730,294 - Echvi_1507 0.64 +2.1
1,730,300 + Echvi_1507 0.64 +0.2
1,730,301 - Echvi_1507 0.64 -1.7
1,730,336 + Echvi_1507 0.67 -0.0
1,730,337 - Echvi_1507 0.67 +1.0
1,730,352 - Echvi_1507 0.69 -0.2
1,730,361 + Echvi_1507 0.69 +0.6
1,730,362 - Echvi_1507 0.69 -1.1

Or see this region's nucleotide sequence