Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1473

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1472 and Echvi_1473 are separated by 224 nucleotidesEchvi_1473 and Echvi_1474 are separated by 182 nucleotides Echvi_1472: Echvi_1472 - UDP-glucose 4-epimerase (EC 5.1.3.2) (from data), at 1,686,915 to 1,687,928 _1472 Echvi_1473: Echvi_1473 - Acyl-CoA dehydrogenases, at 1,688,153 to 1,689,295 _1473 Echvi_1474: Echvi_1474 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 1,689,478 to 1,690,542 _1474 Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1687.180 kb on + strand, within Echvi_1472at 1687.180 kb on + strand, within Echvi_1472at 1687.181 kb on - strand, within Echvi_1472at 1687.226 kb on + strand, within Echvi_1472at 1687.227 kb on - strand, within Echvi_1472at 1687.227 kb on - strand, within Echvi_1472at 1687.228 kb on + strand, within Echvi_1472at 1687.228 kb on + strand, within Echvi_1472at 1687.228 kb on + strand, within Echvi_1472at 1687.228 kb on + strand, within Echvi_1472at 1687.229 kb on - strand, within Echvi_1472at 1687.229 kb on - strand, within Echvi_1472at 1687.229 kb on - strand, within Echvi_1472at 1687.256 kb on + strand, within Echvi_1472at 1687.261 kb on + strand, within Echvi_1472at 1687.261 kb on + strand, within Echvi_1472at 1687.262 kb on - strand, within Echvi_1472at 1687.262 kb on - strand, within Echvi_1472at 1687.361 kb on + strand, within Echvi_1472at 1687.361 kb on + strand, within Echvi_1472at 1687.462 kb on - strand, within Echvi_1472at 1687.508 kb on + strand, within Echvi_1472at 1687.508 kb on + strand, within Echvi_1472at 1687.543 kb on + strand, within Echvi_1472at 1687.566 kb on + strand, within Echvi_1472at 1687.566 kb on + strand, within Echvi_1472at 1687.566 kb on + strand, within Echvi_1472at 1687.566 kb on + strand, within Echvi_1472at 1687.566 kb on + strand, within Echvi_1472at 1687.567 kb on - strand, within Echvi_1472at 1687.640 kb on - strand, within Echvi_1472at 1687.643 kb on + strand, within Echvi_1472at 1687.643 kb on + strand, within Echvi_1472at 1687.643 kb on + strand, within Echvi_1472at 1687.644 kb on - strand, within Echvi_1472at 1687.644 kb on - strand, within Echvi_1472at 1687.644 kb on - strand, within Echvi_1472at 1687.872 kb on + strandat 1687.894 kb on + strandat 1687.894 kb on + strandat 1687.935 kb on + strandat 1687.936 kb on - strandat 1687.954 kb on + strandat 1687.974 kb on - strandat 1688.023 kb on + strandat 1688.066 kb on + strandat 1688.066 kb on + strandat 1688.066 kb on + strandat 1688.067 kb on - strandat 1688.095 kb on + strandat 1688.140 kb on + strandat 1688.140 kb on + strandat 1688.140 kb on + strandat 1688.143 kb on + strandat 1688.143 kb on + strandat 1688.143 kb on + strandat 1688.143 kb on + strandat 1688.144 kb on - strandat 1688.149 kb on + strandat 1688.150 kb on - strandat 1688.152 kb on + strandat 1688.152 kb on + strandat 1688.153 kb on - strandat 1688.318 kb on - strand, within Echvi_1473at 1688.330 kb on + strand, within Echvi_1473at 1688.361 kb on - strand, within Echvi_1473at 1688.361 kb on - strand, within Echvi_1473at 1688.361 kb on - strand, within Echvi_1473at 1688.361 kb on - strand, within Echvi_1473at 1688.364 kb on + strand, within Echvi_1473at 1688.364 kb on + strand, within Echvi_1473at 1688.365 kb on - strand, within Echvi_1473at 1688.447 kb on - strand, within Echvi_1473at 1688.447 kb on - strand, within Echvi_1473at 1688.447 kb on - strand, within Echvi_1473at 1688.563 kb on + strand, within Echvi_1473at 1688.564 kb on - strand, within Echvi_1473at 1688.594 kb on + strand, within Echvi_1473at 1688.595 kb on - strand, within Echvi_1473at 1688.595 kb on - strand, within Echvi_1473at 1688.595 kb on - strand, within Echvi_1473at 1688.687 kb on - strand, within Echvi_1473at 1688.815 kb on + strand, within Echvi_1473at 1688.815 kb on + strand, within Echvi_1473at 1688.815 kb on + strand, within Echvi_1473at 1688.815 kb on + strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.816 kb on - strand, within Echvi_1473at 1688.827 kb on - strand, within Echvi_1473at 1688.839 kb on - strand, within Echvi_1473at 1688.839 kb on - strand, within Echvi_1473at 1688.941 kb on + strand, within Echvi_1473at 1688.942 kb on - strand, within Echvi_1473at 1688.942 kb on - strand, within Echvi_1473at 1688.942 kb on - strand, within Echvi_1473at 1688.946 kb on - strand, within Echvi_1473at 1688.946 kb on - strand, within Echvi_1473at 1689.004 kb on + strand, within Echvi_1473at 1689.087 kb on - strand, within Echvi_1473at 1689.087 kb on - strand, within Echvi_1473at 1689.087 kb on - strand, within Echvi_1473at 1689.090 kb on + strand, within Echvi_1473at 1689.132 kb on + strand, within Echvi_1473at 1689.165 kb on + strand, within Echvi_1473at 1689.165 kb on + strand, within Echvi_1473at 1689.166 kb on - strand, within Echvi_1473at 1689.285 kb on + strandat 1689.285 kb on + strandat 1689.286 kb on - strandat 1689.286 kb on - strandat 1689.286 kb on - strandat 1689.286 kb on - strandat 1689.305 kb on + strandat 1689.306 kb on - strandat 1689.338 kb on + strandat 1689.356 kb on - strandat 1689.356 kb on - strandat 1689.437 kb on + strandat 1689.442 kb on + strandat 1689.444 kb on + strandat 1689.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,687,180 + Echvi_1472 0.26 -2.5
1,687,180 + Echvi_1472 0.26 -1.7
1,687,181 - Echvi_1472 0.26 -0.8
1,687,226 + Echvi_1472 0.31 -1.4
1,687,227 - Echvi_1472 0.31 -0.4
1,687,227 - Echvi_1472 0.31 -1.3
1,687,228 + Echvi_1472 0.31 +0.6
1,687,228 + Echvi_1472 0.31 -1.5
1,687,228 + Echvi_1472 0.31 -2.8
1,687,228 + Echvi_1472 0.31 -1.7
1,687,229 - Echvi_1472 0.31 -1.0
1,687,229 - Echvi_1472 0.31 +0.6
1,687,229 - Echvi_1472 0.31 -0.2
1,687,256 + Echvi_1472 0.34 +1.6
1,687,261 + Echvi_1472 0.34 -1.9
1,687,261 + Echvi_1472 0.34 -1.0
1,687,262 - Echvi_1472 0.34 +2.6
1,687,262 - Echvi_1472 0.34 +1.6
1,687,361 + Echvi_1472 0.44 -1.9
1,687,361 + Echvi_1472 0.44 +0.4
1,687,462 - Echvi_1472 0.54 -2.2
1,687,508 + Echvi_1472 0.58 +0.1
1,687,508 + Echvi_1472 0.58 -3.2
1,687,543 + Echvi_1472 0.62 -0.6
1,687,566 + Echvi_1472 0.64 +1.6
1,687,566 + Echvi_1472 0.64 -2.0
1,687,566 + Echvi_1472 0.64 -3.2
1,687,566 + Echvi_1472 0.64 -0.1
1,687,566 + Echvi_1472 0.64 -3.8
1,687,567 - Echvi_1472 0.64 -1.6
1,687,640 - Echvi_1472 0.71 +1.8
1,687,643 + Echvi_1472 0.72 -1.5
1,687,643 + Echvi_1472 0.72 -3.0
1,687,643 + Echvi_1472 0.72 -2.6
1,687,644 - Echvi_1472 0.72 -0.6
1,687,644 - Echvi_1472 0.72 -0.3
1,687,644 - Echvi_1472 0.72 +0.3
1,687,872 + -1.5
1,687,894 + -2.0
1,687,894 + -1.9
1,687,935 + -1.4
1,687,936 - -0.2
1,687,954 + +0.6
1,687,974 - -0.1
1,688,023 + +0.6
1,688,066 + -2.5
1,688,066 + -2.4
1,688,066 + +0.3
1,688,067 - -2.0
1,688,095 + +0.8
1,688,140 + -0.3
1,688,140 + -1.2
1,688,140 + +0.1
1,688,143 + -0.2
1,688,143 + -1.4
1,688,143 + -1.1
1,688,143 + -0.4
1,688,144 - -0.7
1,688,149 + -0.4
1,688,150 - -2.6
1,688,152 + -0.3
1,688,152 + -1.7
1,688,153 - -0.7
1,688,318 - Echvi_1473 0.14 -0.8
1,688,330 + Echvi_1473 0.15 +1.3
1,688,361 - Echvi_1473 0.18 -1.1
1,688,361 - Echvi_1473 0.18 +0.2
1,688,361 - Echvi_1473 0.18 -1.3
1,688,361 - Echvi_1473 0.18 -0.0
1,688,364 + Echvi_1473 0.18 -0.2
1,688,364 + Echvi_1473 0.18 -1.6
1,688,365 - Echvi_1473 0.19 +1.6
1,688,447 - Echvi_1473 0.26 +1.2
1,688,447 - Echvi_1473 0.26 -2.3
1,688,447 - Echvi_1473 0.26 -0.1
1,688,563 + Echvi_1473 0.36 -0.5
1,688,564 - Echvi_1473 0.36 -1.4
1,688,594 + Echvi_1473 0.39 +0.4
1,688,595 - Echvi_1473 0.39 +1.0
1,688,595 - Echvi_1473 0.39 +0.8
1,688,595 - Echvi_1473 0.39 -0.4
1,688,687 - Echvi_1473 0.47 -0.5
1,688,815 + Echvi_1473 0.58 -2.4
1,688,815 + Echvi_1473 0.58 +1.3
1,688,815 + Echvi_1473 0.58 -1.1
1,688,815 + Echvi_1473 0.58 -3.2
1,688,816 - Echvi_1473 0.58 -1.2
1,688,816 - Echvi_1473 0.58 -0.9
1,688,816 - Echvi_1473 0.58 -1.1
1,688,816 - Echvi_1473 0.58 +0.5
1,688,816 - Echvi_1473 0.58 -0.4
1,688,816 - Echvi_1473 0.58 -1.6
1,688,827 - Echvi_1473 0.59 -0.1
1,688,839 - Echvi_1473 0.60 +0.7
1,688,839 - Echvi_1473 0.60 -1.4
1,688,941 + Echvi_1473 0.69 +1.0
1,688,942 - Echvi_1473 0.69 -1.3
1,688,942 - Echvi_1473 0.69 -0.2
1,688,942 - Echvi_1473 0.69 -2.8
1,688,946 - Echvi_1473 0.69 -2.6
1,688,946 - Echvi_1473 0.69 -1.0
1,689,004 + Echvi_1473 0.74 +1.9
1,689,087 - Echvi_1473 0.82 -0.5
1,689,087 - Echvi_1473 0.82 -0.1
1,689,087 - Echvi_1473 0.82 -1.1
1,689,090 + Echvi_1473 0.82 +1.3
1,689,132 + Echvi_1473 0.86 -1.2
1,689,165 + Echvi_1473 0.89 -1.6
1,689,165 + Echvi_1473 0.89 +0.1
1,689,166 - Echvi_1473 0.89 -0.4
1,689,285 + -0.1
1,689,285 + -0.8
1,689,286 - -0.5
1,689,286 - -1.1
1,689,286 - -0.3
1,689,286 - +1.7
1,689,305 + -0.0
1,689,306 - -1.0
1,689,338 + -1.9
1,689,356 - -0.6
1,689,356 - -1.9
1,689,437 + +0.4
1,689,442 + -0.0
1,689,444 + +0.8
1,689,449 + +0.6

Or see this region's nucleotide sequence