Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1366

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1363 and Echvi_1364 overlap by 4 nucleotidesEchvi_1364 and Echvi_1365 are separated by 11 nucleotidesEchvi_1365 and Echvi_1366 are separated by 10 nucleotidesEchvi_1366 and Echvi_1367 are separated by 94 nucleotides Echvi_1363: Echvi_1363 - hypothetical protein, at 1,569,857 to 1,570,177 _1363 Echvi_1364: Echvi_1364 - hypothetical protein, at 1,570,174 to 1,570,626 _1364 Echvi_1365: Echvi_1365 - hypothetical protein, at 1,570,638 to 1,570,943 _1365 Echvi_1366: Echvi_1366 - hypothetical protein, at 1,570,954 to 1,571,367 _1366 Echvi_1367: Echvi_1367 - RteC protein., at 1,571,462 to 1,572,307 _1367 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1569.987 kb on + strand, within Echvi_1363at 1570.032 kb on + strand, within Echvi_1363at 1570.053 kb on + strand, within Echvi_1363at 1570.109 kb on - strand, within Echvi_1363at 1570.110 kb on + strand, within Echvi_1363at 1570.111 kb on - strand, within Echvi_1363at 1570.177 kb on + strandat 1570.310 kb on + strand, within Echvi_1364at 1570.424 kb on + strand, within Echvi_1364at 1570.424 kb on + strand, within Echvi_1364at 1570.562 kb on + strand, within Echvi_1364at 1570.562 kb on + strand, within Echvi_1364at 1570.641 kb on + strandat 1570.641 kb on + strandat 1570.641 kb on + strandat 1570.687 kb on - strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.896 kb on + strand, within Echvi_1365at 1570.946 kb on + strandat 1571.028 kb on + strand, within Echvi_1366at 1571.073 kb on + strand, within Echvi_1366at 1571.217 kb on + strand, within Echvi_1366at 1571.217 kb on + strand, within Echvi_1366at 1571.217 kb on + strand, within Echvi_1366at 1571.282 kb on + strand, within Echvi_1366at 1571.297 kb on + strand, within Echvi_1366at 1571.297 kb on + strand, within Echvi_1366at 1571.297 kb on + strand, within Echvi_1366at 1571.303 kb on + strand, within Echvi_1366at 1571.303 kb on + strand, within Echvi_1366at 1571.303 kb on + strand, within Echvi_1366at 1571.306 kb on + strand, within Echvi_1366at 1571.538 kb on - strandat 1571.589 kb on + strand, within Echvi_1367at 1571.592 kb on + strand, within Echvi_1367at 1571.592 kb on + strand, within Echvi_1367at 1571.602 kb on + strand, within Echvi_1367at 1571.603 kb on - strand, within Echvi_1367at 1571.670 kb on - strand, within Echvi_1367at 1571.691 kb on + strand, within Echvi_1367at 1571.692 kb on - strand, within Echvi_1367at 1571.695 kb on + strand, within Echvi_1367at 1571.696 kb on - strand, within Echvi_1367at 1571.769 kb on - strand, within Echvi_1367at 1571.925 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.964 kb on + strand, within Echvi_1367at 1572.045 kb on - strand, within Echvi_1367at 1572.066 kb on + strand, within Echvi_1367at 1572.066 kb on + strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.070 kb on - strand, within Echvi_1367at 1572.081 kb on + strand, within Echvi_1367at 1572.085 kb on - strand, within Echvi_1367at 1572.176 kb on + strand, within Echvi_1367at 1572.261 kb on - strandat 1572.282 kb on + strandat 1572.283 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,569,987 + Echvi_1363 0.40 -1.7
1,570,032 + Echvi_1363 0.55 +1.3
1,570,053 + Echvi_1363 0.61 -0.1
1,570,109 - Echvi_1363 0.79 +1.6
1,570,110 + Echvi_1363 0.79 -0.5
1,570,111 - Echvi_1363 0.79 -0.2
1,570,177 + -1.7
1,570,310 + Echvi_1364 0.30 -0.9
1,570,424 + Echvi_1364 0.55 -0.6
1,570,424 + Echvi_1364 0.55 -0.1
1,570,562 + Echvi_1364 0.86 -0.1
1,570,562 + Echvi_1364 0.86 -0.9
1,570,641 + +1.0
1,570,641 + +0.3
1,570,641 + -0.1
1,570,687 - Echvi_1365 0.16 -0.0
1,570,798 + Echvi_1365 0.52 +0.5
1,570,798 + Echvi_1365 0.52 +0.6
1,570,798 + Echvi_1365 0.52 +0.6
1,570,896 + Echvi_1365 0.84 +3.2
1,570,946 + -0.5
1,571,028 + Echvi_1366 0.18 -0.0
1,571,073 + Echvi_1366 0.29 -0.0
1,571,217 + Echvi_1366 0.64 -1.1
1,571,217 + Echvi_1366 0.64 -0.0
1,571,217 + Echvi_1366 0.64 -0.5
1,571,282 + Echvi_1366 0.79 -0.5
1,571,297 + Echvi_1366 0.83 -0.4
1,571,297 + Echvi_1366 0.83 +0.3
1,571,297 + Echvi_1366 0.83 -2.5
1,571,303 + Echvi_1366 0.84 +1.0
1,571,303 + Echvi_1366 0.84 -0.4
1,571,303 + Echvi_1366 0.84 -0.5
1,571,306 + Echvi_1366 0.85 -0.2
1,571,538 - +0.8
1,571,589 + Echvi_1367 0.15 -0.1
1,571,592 + Echvi_1367 0.15 -0.6
1,571,592 + Echvi_1367 0.15 +0.1
1,571,602 + Echvi_1367 0.17 -0.9
1,571,603 - Echvi_1367 0.17 -2.0
1,571,670 - Echvi_1367 0.25 -1.7
1,571,691 + Echvi_1367 0.27 -0.6
1,571,692 - Echvi_1367 0.27 -1.6
1,571,695 + Echvi_1367 0.28 -1.6
1,571,696 - Echvi_1367 0.28 -2.0
1,571,769 - Echvi_1367 0.36 +0.3
1,571,925 + Echvi_1367 0.55 -0.2
1,571,958 + Echvi_1367 0.59 +0.2
1,571,958 + Echvi_1367 0.59 -1.6
1,571,958 + Echvi_1367 0.59 +0.6
1,571,959 - Echvi_1367 0.59 +1.2
1,571,959 - Echvi_1367 0.59 -0.9
1,571,959 - Echvi_1367 0.59 +0.1
1,571,964 + Echvi_1367 0.59 -2.2
1,572,045 - Echvi_1367 0.69 -0.7
1,572,066 + Echvi_1367 0.71 -0.7
1,572,066 + Echvi_1367 0.71 +1.0
1,572,067 - Echvi_1367 0.72 -0.2
1,572,067 - Echvi_1367 0.72 +0.5
1,572,067 - Echvi_1367 0.72 -0.1
1,572,067 - Echvi_1367 0.72 -1.0
1,572,070 - Echvi_1367 0.72 -1.2
1,572,081 + Echvi_1367 0.73 +0.6
1,572,085 - Echvi_1367 0.74 -0.3
1,572,176 + Echvi_1367 0.84 -2.3
1,572,261 - +0.3
1,572,282 + +0.7
1,572,283 - -0.2
1,572,315 - -0.1
1,572,315 - +1.1
1,572,315 - +1.5
1,572,315 - +0.6

Or see this region's nucleotide sequence