Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0565

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0564 and Echvi_0565 are separated by 231 nucleotidesEchvi_0565 and Echvi_0566 are separated by 590 nucleotides Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011 _0564 Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709 _0565 Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) (from data), at 641,300 to 644,539 _0566 Position (kb) 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 638.246 kb on + strand, within Echvi_0564at 638.247 kb on - strand, within Echvi_0564at 638.259 kb on - strand, within Echvi_0564at 638.312 kb on + strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.581 kb on + strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.582 kb on - strand, within Echvi_0564at 638.587 kb on + strand, within Echvi_0564at 638.587 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.633 kb on + strand, within Echvi_0564at 638.634 kb on - strand, within Echvi_0564at 638.634 kb on - strand, within Echvi_0564at 638.658 kb on + strand, within Echvi_0564at 638.659 kb on - strand, within Echvi_0564at 638.728 kb on + strand, within Echvi_0564at 638.729 kb on - strand, within Echvi_0564at 638.755 kb on + strand, within Echvi_0564at 638.811 kb on + strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.812 kb on - strand, within Echvi_0564at 638.850 kb on - strand, within Echvi_0564at 638.858 kb on + strand, within Echvi_0564at 638.858 kb on + strand, within Echvi_0564at 638.859 kb on - strandat 638.867 kb on + strand, within Echvi_0564at 638.870 kb on + strand, within Echvi_0564at 638.870 kb on + strand, within Echvi_0564at 638.979 kb on + strandat 638.980 kb on - strandat 638.980 kb on - strandat 639.044 kb on + strandat 639.061 kb on + strandat 639.063 kb on + strandat 639.064 kb on - strandat 639.064 kb on - strandat 639.094 kb on + strandat 639.126 kb on + strandat 639.126 kb on + strandat 639.233 kb on + strandat 639.233 kb on + strandat 639.234 kb on - strandat 639.235 kb on + strandat 639.235 kb on + strandat 639.277 kb on - strandat 639.281 kb on - strandat 639.353 kb on - strandat 639.353 kb on - strandat 639.372 kb on - strandat 639.372 kb on - strandat 639.390 kb on - strand, within Echvi_0565at 639.391 kb on + strand, within Echvi_0565at 639.392 kb on - strand, within Echvi_0565at 639.418 kb on - strand, within Echvi_0565at 639.497 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.591 kb on + strand, within Echvi_0565at 639.592 kb on - strand, within Echvi_0565at 639.592 kb on - strand, within Echvi_0565at 639.611 kb on + strand, within Echvi_0565at 639.612 kb on - strand, within Echvi_0565at 639.615 kb on - strand, within Echvi_0565at 639.710 kb on + strand, within Echvi_0565at 639.710 kb on + strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.711 kb on - strand, within Echvi_0565at 639.767 kb on + strand, within Echvi_0565at 639.801 kb on - strand, within Echvi_0565at 639.856 kb on + strand, within Echvi_0565at 639.857 kb on - strand, within Echvi_0565at 639.857 kb on - strand, within Echvi_0565at 639.872 kb on + strand, within Echvi_0565at 639.908 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.918 kb on + strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.919 kb on - strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.939 kb on + strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.940 kb on - strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.996 kb on + strand, within Echvi_0565at 639.997 kb on - strand, within Echvi_0565at 639.997 kb on - strand, within Echvi_0565at 640.009 kb on + strand, within Echvi_0565at 640.014 kb on + strand, within Echvi_0565at 640.019 kb on + strand, within Echvi_0565at 640.020 kb on - strand, within Echvi_0565at 640.020 kb on - strand, within Echvi_0565at 640.039 kb on - strand, within Echvi_0565at 640.067 kb on + strand, within Echvi_0565at 640.274 kb on + strand, within Echvi_0565at 640.300 kb on + strand, within Echvi_0565at 640.300 kb on + strand, within Echvi_0565at 640.300 kb on + strand, within Echvi_0565at 640.301 kb on - strand, within Echvi_0565at 640.301 kb on - strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.347 kb on + strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.420 kb on + strand, within Echvi_0565at 640.420 kb on + strand, within Echvi_0565at 640.421 kb on - strand, within Echvi_0565at 640.477 kb on - strand, within Echvi_0565at 640.714 kb on + strandat 640.716 kb on + strandat 640.717 kb on - strandat 640.910 kb on + strandat 640.928 kb on + strandat 640.932 kb on - strandat 640.951 kb on + strandat 641.046 kb on + strandat 641.054 kb on + strandat 641.055 kb on - strandat 641.090 kb on - strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.148 kb on - strandat 641.172 kb on - strandat 641.177 kb on + strandat 641.198 kb on + strandat 641.198 kb on + strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.225 kb on + strandat 641.245 kb on + strandat 641.245 kb on + strandat 641.277 kb on + strandat 641.278 kb on - strandat 641.284 kb on - strandat 641.287 kb on + strandat 641.293 kb on + strandat 641.350 kb on + strandat 641.398 kb on - strandat 641.455 kb on + strandat 641.455 kb on + strandat 641.455 kb on + strandat 641.456 kb on - strandat 641.456 kb on - strandat 641.508 kb on - strandat 641.520 kb on + strandat 641.521 kb on - strandat 641.521 kb on - strandat 641.533 kb on + strandat 641.558 kb on + strandat 641.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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638,246 + Echvi_0564 0.42 +0.3
638,247 - Echvi_0564 0.42 +1.0
638,259 - Echvi_0564 0.43 -0.9
638,312 + Echvi_0564 0.47 +0.2
638,324 - Echvi_0564 0.48 +0.6
638,324 - Echvi_0564 0.48 +2.8
638,416 + Echvi_0564 0.55 -1.3
638,416 + Echvi_0564 0.55 -0.0
638,416 + Echvi_0564 0.55 -0.6
638,581 + Echvi_0564 0.67 -0.2
638,581 + Echvi_0564 0.67 -1.2
638,581 + Echvi_0564 0.67 -1.5
638,581 + Echvi_0564 0.67 +0.8
638,581 + Echvi_0564 0.67 -0.2
638,581 + Echvi_0564 0.67 +0.4
638,581 + Echvi_0564 0.67 -0.2
638,581 + Echvi_0564 0.67 +0.8
638,582 - Echvi_0564 0.67 +1.0
638,582 - Echvi_0564 0.67 -2.5
638,582 - Echvi_0564 0.67 -1.8
638,582 - Echvi_0564 0.67 -0.3
638,582 - Echvi_0564 0.67 -1.3
638,582 - Echvi_0564 0.67 +0.2
638,582 - Echvi_0564 0.67 -3.1
638,582 - Echvi_0564 0.67 -2.3
638,582 - Echvi_0564 0.67 -0.6
638,582 - Echvi_0564 0.67 -0.0
638,582 - Echvi_0564 0.67 +0.6
638,587 + Echvi_0564 0.68 +0.5
638,587 + Echvi_0564 0.68 -0.5
638,633 + Echvi_0564 0.71 +0.2
638,633 + Echvi_0564 0.71 +0.1
638,633 + Echvi_0564 0.71 +0.4
638,634 - Echvi_0564 0.71 -0.4
638,634 - Echvi_0564 0.71 -0.1
638,658 + Echvi_0564 0.73 -0.1
638,659 - Echvi_0564 0.73 +0.4
638,728 + Echvi_0564 0.78 +1.3
638,729 - Echvi_0564 0.78 +0.2
638,755 + Echvi_0564 0.80 +0.6
638,811 + Echvi_0564 0.85 -0.2
638,812 - Echvi_0564 0.85 +0.4
638,812 - Echvi_0564 0.85 +0.4
638,812 - Echvi_0564 0.85 -0.0
638,850 - Echvi_0564 0.88 +1.0
638,858 + Echvi_0564 0.88 +0.7
638,858 + Echvi_0564 0.88 -0.3
638,859 - +0.6
638,867 + Echvi_0564 0.89 -0.8
638,870 + Echvi_0564 0.89 -0.3
638,870 + Echvi_0564 0.89 +0.6
638,979 + +1.6
638,980 - -1.2
638,980 - +0.6
639,044 + -1.0
639,061 + -0.3
639,063 + -0.4
639,064 - +0.6
639,064 - -0.4
639,094 + -0.4
639,126 + +0.2
639,126 + -0.0
639,233 + +1.1
639,233 + +2.8
639,234 - -0.9
639,235 + -0.2
639,235 + -0.1
639,277 - +0.2
639,281 - -0.3
639,353 - +0.3
639,353 - -1.0
639,372 - +2.0
639,372 - -0.5
639,390 - Echvi_0565 0.10 +1.0
639,391 + Echvi_0565 0.10 -1.8
639,392 - Echvi_0565 0.10 +0.2
639,418 - Echvi_0565 0.12 +1.6
639,497 + Echvi_0565 0.17 +1.3
639,591 + Echvi_0565 0.24 -2.1
639,591 + Echvi_0565 0.24 -1.2
639,591 + Echvi_0565 0.24 +0.4
639,592 - Echvi_0565 0.24 +1.6
639,592 - Echvi_0565 0.24 +0.4
639,611 + Echvi_0565 0.25 +0.1
639,612 - Echvi_0565 0.25 +0.6
639,615 - Echvi_0565 0.25 -0.3
639,710 + Echvi_0565 0.32 +2.6
639,710 + Echvi_0565 0.32 -1.2
639,711 - Echvi_0565 0.32 +0.8
639,711 - Echvi_0565 0.32 +0.4
639,711 - Echvi_0565 0.32 -0.6
639,711 - Echvi_0565 0.32 +0.6
639,767 + Echvi_0565 0.36 +0.4
639,801 - Echvi_0565 0.38 -0.0
639,856 + Echvi_0565 0.42 -2.8
639,857 - Echvi_0565 0.42 -0.4
639,857 - Echvi_0565 0.42 +0.8
639,872 + Echvi_0565 0.43 +1.0
639,908 + Echvi_0565 0.45 -0.3
639,918 + Echvi_0565 0.46 +0.9
639,918 + Echvi_0565 0.46 +0.9
639,918 + Echvi_0565 0.46 -0.1
639,919 - Echvi_0565 0.46 +1.1
639,919 - Echvi_0565 0.46 -1.6
639,919 - Echvi_0565 0.46 -1.4
639,939 + Echvi_0565 0.47 +0.7
639,939 + Echvi_0565 0.47 +0.7
639,939 + Echvi_0565 0.47 +1.0
639,939 + Echvi_0565 0.47 -1.4
639,939 + Echvi_0565 0.47 +1.3
639,939 + Echvi_0565 0.47 +0.0
639,940 - Echvi_0565 0.48 -0.8
639,940 - Echvi_0565 0.48 -0.2
639,940 - Echvi_0565 0.48 +0.2
639,996 + Echvi_0565 0.51 +0.5
639,996 + Echvi_0565 0.51 -0.2
639,996 + Echvi_0565 0.51 +0.2
639,996 + Echvi_0565 0.51 +0.5
639,996 + Echvi_0565 0.51 +0.4
639,997 - Echvi_0565 0.51 +0.2
639,997 - Echvi_0565 0.51 +1.1
640,009 + Echvi_0565 0.52 -0.2
640,014 + Echvi_0565 0.53 +0.4
640,019 + Echvi_0565 0.53 -0.0
640,020 - Echvi_0565 0.53 -0.4
640,020 - Echvi_0565 0.53 -1.2
640,039 - Echvi_0565 0.54 -0.4
640,067 + Echvi_0565 0.56 +1.0
640,274 + Echvi_0565 0.70 +0.7
640,300 + Echvi_0565 0.72 +0.9
640,300 + Echvi_0565 0.72 +1.6
640,300 + Echvi_0565 0.72 +0.5
640,301 - Echvi_0565 0.72 -0.2
640,301 - Echvi_0565 0.72 -0.3
640,302 + Echvi_0565 0.72 -0.1
640,302 + Echvi_0565 0.72 -0.9
640,302 + Echvi_0565 0.72 +1.8
640,302 + Echvi_0565 0.72 +1.5
640,302 + Echvi_0565 0.72 -0.2
640,302 + Echvi_0565 0.72 +1.0
640,303 - Echvi_0565 0.72 +1.9
640,303 - Echvi_0565 0.72 -2.5
640,303 - Echvi_0565 0.72 +0.6
640,303 - Echvi_0565 0.72 +1.1
640,303 - Echvi_0565 0.72 -0.1
640,347 + Echvi_0565 0.75 +1.5
640,348 - Echvi_0565 0.75 -0.4
640,348 - Echvi_0565 0.75 -1.0
640,348 - Echvi_0565 0.75 +0.2
640,348 - Echvi_0565 0.75 +1.2
640,348 - Echvi_0565 0.75 -1.0
640,420 + Echvi_0565 0.80 +1.3
640,420 + Echvi_0565 0.80 +0.8
640,421 - Echvi_0565 0.80 -0.0
640,477 - Echvi_0565 0.84 -0.0
640,714 + +1.9
640,716 + +1.7
640,717 - +0.5
640,910 + +2.4
640,928 + +1.8
640,932 - -0.4
640,951 + +1.8
641,046 + +1.1
641,054 + +2.1
641,055 - -3.4
641,090 - +1.0
641,120 + +2.4
641,120 + +2.4
641,120 + +2.0
641,120 + +1.0
641,148 - -1.3
641,172 - -1.5
641,177 + +1.5
641,198 + +2.0
641,198 + -0.4
641,204 - +0.5
641,204 - -0.6
641,204 - -0.7
641,204 - -1.4
641,225 + +2.1
641,245 + +0.7
641,245 + +1.4
641,277 + +1.3
641,278 - -2.8
641,284 - -0.0
641,287 + -0.5
641,293 + +0.1
641,350 + +1.6
641,398 - +1.0
641,455 + -0.2
641,455 + -1.3
641,455 + +0.5
641,456 - -0.2
641,456 - -1.5
641,508 - -2.3
641,520 + -1.1
641,521 - -2.3
641,521 - +1.2
641,533 + -0.1
641,558 + +0.1
641,599 - -1.6

Or see this region's nucleotide sequence