Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0382

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0381 and Echvi_0382 overlap by 4 nucleotidesEchvi_0382 and Echvi_0383 are separated by 0 nucleotidesEchvi_0383 and Echvi_0384 overlap by 1 nucleotides Echvi_0381: Echvi_0381 - Restriction endonuclease S subunits, at 406,518 to 407,846 _0381 Echvi_0382: Echvi_0382 - Type I restriction-modification system methyltransferase subunit, at 407,843 to 409,279 _0382 Echvi_0383: Echvi_0383 - Virulence protein, at 409,280 to 410,266 _0383 Echvi_0384: Echvi_0384 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 410,266 to 412,722 _0384 Position (kb) 407 408 409 410Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.904 kb on + strand, within Echvi_0381at 406.905 kb on - strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.962 kb on + strand, within Echvi_0381at 406.963 kb on - strand, within Echvi_0381at 406.986 kb on - strand, within Echvi_0381at 406.989 kb on + strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.993 kb on - strand, within Echvi_0381at 407.074 kb on + strand, within Echvi_0381at 407.082 kb on - strand, within Echvi_0381at 407.103 kb on - strand, within Echvi_0381at 407.129 kb on + strand, within Echvi_0381at 407.165 kb on + strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.391 kb on - strand, within Echvi_0381at 407.425 kb on - strand, within Echvi_0381at 407.481 kb on + strand, within Echvi_0381at 407.482 kb on - strand, within Echvi_0381at 407.510 kb on + strand, within Echvi_0381at 407.541 kb on + strand, within Echvi_0381at 407.542 kb on - strand, within Echvi_0381at 407.573 kb on + strand, within Echvi_0381at 407.574 kb on - strand, within Echvi_0381at 407.641 kb on - strand, within Echvi_0381at 407.693 kb on + strand, within Echvi_0381at 407.724 kb on - strandat 407.748 kb on + strandat 407.748 kb on + strandat 407.765 kb on + strandat 407.765 kb on + strandat 407.824 kb on - strandat 407.849 kb on + strandat 407.862 kb on - strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.864 kb on - strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.871 kb on - strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.916 kb on - strandat 407.972 kb on + strandat 407.972 kb on + strandat 407.973 kb on - strandat 407.992 kb on + strand, within Echvi_0382at 407.992 kb on + strand, within Echvi_0382at 407.993 kb on - strand, within Echvi_0382at 408.074 kb on + strand, within Echvi_0382at 408.075 kb on - strand, within Echvi_0382at 408.094 kb on + strand, within Echvi_0382at 408.098 kb on - strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.136 kb on - strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.245 kb on - strand, within Echvi_0382at 408.269 kb on + strand, within Echvi_0382at 408.270 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.344 kb on + strand, within Echvi_0382at 408.345 kb on - strand, within Echvi_0382at 408.421 kb on + strand, within Echvi_0382at 408.422 kb on - strand, within Echvi_0382at 408.486 kb on + strand, within Echvi_0382at 408.487 kb on - strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.576 kb on + strand, within Echvi_0382at 408.591 kb on + strand, within Echvi_0382at 408.592 kb on - strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.635 kb on + strand, within Echvi_0382at 408.636 kb on - strand, within Echvi_0382at 408.641 kb on - strand, within Echvi_0382at 408.668 kb on - strand, within Echvi_0382at 408.681 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.775 kb on - strand, within Echvi_0382at 408.869 kb on + strand, within Echvi_0382at 408.890 kb on + strand, within Echvi_0382at 408.890 kb on + strand, within Echvi_0382at 408.921 kb on + strand, within Echvi_0382at 408.922 kb on - strand, within Echvi_0382at 408.951 kb on - strand, within Echvi_0382at 408.956 kb on + strand, within Echvi_0382at 408.956 kb on + strand, within Echvi_0382at 408.998 kb on + strand, within Echvi_0382at 408.999 kb on - strand, within Echvi_0382at 409.252 kb on + strandat 409.253 kb on - strandat 409.256 kb on + strandat 409.282 kb on - strandat 409.298 kb on + strandat 409.501 kb on + strand, within Echvi_0383at 409.502 kb on - strand, within Echvi_0383at 409.502 kb on - strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.607 kb on + strand, within Echvi_0383at 409.608 kb on - strand, within Echvi_0383at 409.651 kb on + strand, within Echvi_0383at 409.652 kb on - strand, within Echvi_0383at 409.680 kb on - strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.786 kb on - strand, within Echvi_0383at 409.791 kb on - strand, within Echvi_0383at 409.791 kb on - strand, within Echvi_0383at 409.792 kb on + strand, within Echvi_0383at 409.799 kb on - strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.847 kb on - strand, within Echvi_0383at 409.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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406,860 + Echvi_0381 0.26 +0.2
406,860 + Echvi_0381 0.26 +1.9
406,860 + Echvi_0381 0.26 +0.8
406,860 + Echvi_0381 0.26 +1.7
406,860 + Echvi_0381 0.26 +0.6
406,904 + Echvi_0381 0.29 +0.4
406,905 - Echvi_0381 0.29 -0.3
406,916 + Echvi_0381 0.30 -1.3
406,916 + Echvi_0381 0.30 -0.8
406,916 + Echvi_0381 0.30 +2.1
406,962 + Echvi_0381 0.33 +0.0
406,963 - Echvi_0381 0.33 -1.2
406,986 - Echvi_0381 0.35 +0.1
406,989 + Echvi_0381 0.35 +0.8
406,990 - Echvi_0381 0.36 +2.0
406,990 - Echvi_0381 0.36 +0.4
406,993 - Echvi_0381 0.36 -0.7
407,074 + Echvi_0381 0.42 -0.4
407,082 - Echvi_0381 0.42 -0.6
407,103 - Echvi_0381 0.44 -1.7
407,129 + Echvi_0381 0.46 +1.0
407,165 + Echvi_0381 0.49 +0.8
407,301 - Echvi_0381 0.59 +0.1
407,301 - Echvi_0381 0.59 +2.7
407,301 - Echvi_0381 0.59 -0.6
407,391 - Echvi_0381 0.66 -1.3
407,425 - Echvi_0381 0.68 +0.8
407,481 + Echvi_0381 0.72 +1.8
407,482 - Echvi_0381 0.73 -0.2
407,510 + Echvi_0381 0.75 +0.1
407,541 + Echvi_0381 0.77 +0.9
407,542 - Echvi_0381 0.77 -0.5
407,573 + Echvi_0381 0.79 -0.0
407,574 - Echvi_0381 0.79 -1.1
407,641 - Echvi_0381 0.84 +0.9
407,693 + Echvi_0381 0.88 -0.4
407,724 - -1.4
407,748 + +2.9
407,748 + -0.3
407,765 + +0.2
407,765 + -1.2
407,824 - -0.1
407,849 + -1.3
407,862 - -1.1
407,863 + -0.5
407,863 + -0.0
407,863 + -0.8
407,864 - +1.6
407,870 + +1.8
407,870 + +1.2
407,870 + +2.0
407,870 + -0.6
407,870 + +0.1
407,870 + +0.7
407,871 - -1.0
407,873 + -1.3
407,873 + -0.9
407,873 + -0.9
407,873 + -0.2
407,873 + +0.2
407,873 + +1.8
407,874 - -1.9
407,874 - -0.0
407,874 - -0.6
407,916 - -0.3
407,972 + -0.1
407,972 + +0.7
407,973 - +0.2
407,992 + Echvi_0382 0.10 +0.7
407,992 + Echvi_0382 0.10 +4.1
407,993 - Echvi_0382 0.10 -0.8
408,074 + Echvi_0382 0.16 +1.0
408,075 - Echvi_0382 0.16 -0.3
408,094 + Echvi_0382 0.17 +0.5
408,098 - Echvi_0382 0.18 -0.6
408,099 + Echvi_0382 0.18 -0.4
408,099 + Echvi_0382 0.18 -0.8
408,100 - Echvi_0382 0.18 -0.7
408,100 - Echvi_0382 0.18 +0.6
408,132 + Echvi_0382 0.20 +0.2
408,132 + Echvi_0382 0.20 +1.8
408,133 - Echvi_0382 0.20 -0.0
408,133 - Echvi_0382 0.20 -0.6
408,133 - Echvi_0382 0.20 +0.5
408,135 + Echvi_0382 0.20 -0.7
408,135 + Echvi_0382 0.20 +2.3
408,135 + Echvi_0382 0.20 -1.0
408,136 - Echvi_0382 0.20 +1.0
408,140 + Echvi_0382 0.21 -0.6
408,140 + Echvi_0382 0.21 -1.7
408,140 + Echvi_0382 0.21 +0.2
408,141 - Echvi_0382 0.21 -1.4
408,141 - Echvi_0382 0.21 +0.9
408,193 + Echvi_0382 0.24 -1.1
408,193 + Echvi_0382 0.24 -0.2
408,198 + Echvi_0382 0.25 -0.4
408,198 + Echvi_0382 0.25 -0.1
408,245 - Echvi_0382 0.28 +0.7
408,269 + Echvi_0382 0.30 -1.3
408,270 - Echvi_0382 0.30 -1.4
408,329 - Echvi_0382 0.34 -1.1
408,329 - Echvi_0382 0.34 -0.1
408,344 + Echvi_0382 0.35 -0.3
408,345 - Echvi_0382 0.35 -1.1
408,421 + Echvi_0382 0.40 +1.6
408,422 - Echvi_0382 0.40 +0.8
408,486 + Echvi_0382 0.45 +1.1
408,487 - Echvi_0382 0.45 +0.4
408,541 + Echvi_0382 0.49 +1.0
408,541 + Echvi_0382 0.49 +0.8
408,541 + Echvi_0382 0.49 -0.5
408,576 + Echvi_0382 0.51 +1.7
408,591 + Echvi_0382 0.52 +0.2
408,592 - Echvi_0382 0.52 +1.6
408,617 + Echvi_0382 0.54 -0.5
408,617 + Echvi_0382 0.54 +1.3
408,619 + Echvi_0382 0.54 -0.8
408,619 + Echvi_0382 0.54 +0.7
408,620 - Echvi_0382 0.54 +0.2
408,620 - Echvi_0382 0.54 +2.6
408,620 - Echvi_0382 0.54 -0.5
408,620 - Echvi_0382 0.54 +1.2
408,635 + Echvi_0382 0.55 -1.0
408,636 - Echvi_0382 0.55 -0.8
408,641 - Echvi_0382 0.56 +0.4
408,668 - Echvi_0382 0.57 +1.8
408,681 + Echvi_0382 0.58 +1.6
408,700 + Echvi_0382 0.60 +3.0
408,700 + Echvi_0382 0.60 -0.4
408,700 + Echvi_0382 0.60 +0.0
408,700 + Echvi_0382 0.60 +0.4
408,775 - Echvi_0382 0.65 +1.3
408,869 + Echvi_0382 0.71 -0.0
408,890 + Echvi_0382 0.73 -0.6
408,890 + Echvi_0382 0.73 -0.5
408,921 + Echvi_0382 0.75 -0.8
408,922 - Echvi_0382 0.75 -0.4
408,951 - Echvi_0382 0.77 +0.8
408,956 + Echvi_0382 0.77 -1.4
408,956 + Echvi_0382 0.77 +0.1
408,998 + Echvi_0382 0.80 -0.5
408,999 - Echvi_0382 0.80 -2.1
409,252 + +0.6
409,253 - +0.7
409,256 + +0.6
409,282 - +0.7
409,298 + -0.6
409,501 + Echvi_0383 0.22 -0.9
409,502 - Echvi_0383 0.22 +0.6
409,502 - Echvi_0383 0.22 -0.9
409,503 + Echvi_0383 0.23 -0.5
409,503 + Echvi_0383 0.23 +0.3
409,503 + Echvi_0383 0.23 +0.8
409,503 + Echvi_0383 0.23 -2.8
409,503 + Echvi_0383 0.23 -0.7
409,503 + Echvi_0383 0.23 -1.2
409,607 + Echvi_0383 0.33 -0.7
409,608 - Echvi_0383 0.33 -0.1
409,651 + Echvi_0383 0.38 -0.4
409,652 - Echvi_0383 0.38 +0.1
409,680 - Echvi_0383 0.41 -0.3
409,785 + Echvi_0383 0.51 -0.2
409,785 + Echvi_0383 0.51 -1.0
409,785 + Echvi_0383 0.51 +1.8
409,786 - Echvi_0383 0.51 -2.6
409,791 - Echvi_0383 0.52 +0.2
409,791 - Echvi_0383 0.52 -1.1
409,792 + Echvi_0383 0.52 +2.4
409,799 - Echvi_0383 0.53 -0.8
409,803 + Echvi_0383 0.53 +0.4
409,803 + Echvi_0383 0.53 +1.6
409,803 + Echvi_0383 0.53 +0.7
409,803 + Echvi_0383 0.53 +0.3
409,803 + Echvi_0383 0.53 +0.8
409,803 + Echvi_0383 0.53 +2.3
409,803 + Echvi_0383 0.53 -0.8
409,803 + Echvi_0383 0.53 -0.9
409,804 - Echvi_0383 0.53 -0.1
409,804 - Echvi_0383 0.53 +0.6
409,804 - Echvi_0383 0.53 -0.7
409,804 - Echvi_0383 0.53 +0.1
409,804 - Echvi_0383 0.53 -0.3
409,804 - Echvi_0383 0.53 -2.2
409,804 - Echvi_0383 0.53 +2.6
409,846 + Echvi_0383 0.57 -1.1
409,846 + Echvi_0383 0.57 +0.6
409,846 + Echvi_0383 0.57 +0.5
409,846 + Echvi_0383 0.57 -2.1
409,846 + Echvi_0383 0.57 +1.9
409,846 + Echvi_0383 0.57 -0.6
409,846 + Echvi_0383 0.57 -1.0
409,847 - Echvi_0383 0.57 -0.9
409,847 - +1.6

Or see this region's nucleotide sequence