Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21655

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21650 and CA264_21655 are separated by 4 nucleotidesCA264_21655 and CA264_21660 are separated by 11 nucleotidesCA264_21660 and CA264_21665 are separated by 102 nucleotides CA264_21650: CA264_21650 - thymidine phosphorylase, at 198,334 to 199,827 _21650 CA264_21655: CA264_21655 - MBL fold hydrolase, at 199,832 to 201,199 _21655 CA264_21660: CA264_21660 - ATPase, at 201,211 to 202,068 _21660 CA264_21665: CA264_21665 - 2-hydroxyacid dehydrogenase, at 202,171 to 203,169 _21665 Position (kb) 199 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2at 198.835 kb on + strand, within CA264_21650at 198.940 kb on + strand, within CA264_21650at 198.940 kb on + strand, within CA264_21650at 199.010 kb on - strand, within CA264_21650at 199.042 kb on + strand, within CA264_21650at 199.043 kb on - strand, within CA264_21650at 199.168 kb on - strand, within CA264_21650at 199.176 kb on + strand, within CA264_21650at 199.267 kb on - strand, within CA264_21650at 199.267 kb on - strand, within CA264_21650at 199.274 kb on - strand, within CA264_21650at 199.274 kb on - strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.277 kb on - strand, within CA264_21650at 199.277 kb on - strand, within CA264_21650at 199.278 kb on + strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.310 kb on - strand, within CA264_21650at 199.327 kb on + strand, within CA264_21650at 199.328 kb on - strand, within CA264_21650at 199.331 kb on - strand, within CA264_21650at 199.331 kb on - strand, within CA264_21650at 199.428 kb on + strand, within CA264_21650at 199.428 kb on + strand, within CA264_21650at 199.438 kb on + strand, within CA264_21650at 199.438 kb on + strand, within CA264_21650at 199.439 kb on - strand, within CA264_21650at 199.439 kb on - strand, within CA264_21650at 199.468 kb on + strand, within CA264_21650at 199.468 kb on + strand, within CA264_21650at 199.504 kb on - strand, within CA264_21650at 199.518 kb on - strand, within CA264_21650at 199.558 kb on + strand, within CA264_21650at 199.559 kb on - strand, within CA264_21650at 199.560 kb on + strand, within CA264_21650at 199.667 kb on - strand, within CA264_21650at 199.678 kb on + strandat 199.706 kb on - strandat 199.706 kb on - strandat 199.737 kb on + strandat 199.738 kb on - strandat 199.741 kb on + strandat 199.741 kb on + strandat 199.742 kb on - strandat 199.742 kb on - strandat 199.742 kb on - strandat 199.763 kb on + strandat 199.763 kb on + strandat 199.764 kb on - strandat 199.764 kb on - strandat 199.764 kb on - strandat 199.811 kb on - strandat 199.834 kb on - strandat 199.834 kb on - strandat 199.835 kb on + strandat 199.849 kb on + strandat 199.849 kb on + strandat 199.850 kb on - strandat 199.851 kb on + strandat 199.851 kb on + strandat 199.852 kb on - strandat 199.852 kb on - strandat 199.852 kb on - strandat 199.853 kb on + strandat 199.854 kb on - strandat 199.854 kb on - strandat 199.943 kb on + strandat 199.974 kb on - strand, within CA264_21655at 200.173 kb on - strand, within CA264_21655at 200.177 kb on + strand, within CA264_21655at 200.177 kb on + strand, within CA264_21655at 200.177 kb on + strand, within CA264_21655at 200.178 kb on - strand, within CA264_21655at 200.178 kb on - strand, within CA264_21655at 200.178 kb on - strand, within CA264_21655at 200.236 kb on + strand, within CA264_21655at 200.239 kb on + strand, within CA264_21655at 200.261 kb on + strand, within CA264_21655at 200.262 kb on - strand, within CA264_21655at 200.281 kb on + strand, within CA264_21655at 200.346 kb on - strand, within CA264_21655at 200.347 kb on + strand, within CA264_21655at 200.352 kb on - strand, within CA264_21655at 200.390 kb on + strand, within CA264_21655at 200.537 kb on + strand, within CA264_21655at 200.538 kb on - strand, within CA264_21655at 200.549 kb on + strand, within CA264_21655at 200.562 kb on + strand, within CA264_21655at 200.562 kb on + strand, within CA264_21655at 200.563 kb on - strand, within CA264_21655at 200.574 kb on - strand, within CA264_21655at 200.576 kb on - strand, within CA264_21655at 200.614 kb on - strand, within CA264_21655at 200.614 kb on - strand, within CA264_21655at 200.673 kb on - strand, within CA264_21655at 200.704 kb on + strand, within CA264_21655at 200.704 kb on + strand, within CA264_21655at 200.715 kb on + strand, within CA264_21655at 200.782 kb on - strand, within CA264_21655at 200.798 kb on + strand, within CA264_21655at 200.834 kb on - strand, within CA264_21655at 200.855 kb on - strand, within CA264_21655at 200.906 kb on + strand, within CA264_21655at 200.962 kb on + strand, within CA264_21655at 200.962 kb on + strand, within CA264_21655at 200.963 kb on - strand, within CA264_21655at 200.967 kb on - strand, within CA264_21655at 201.080 kb on + strandat 201.133 kb on + strandat 201.179 kb on + strandat 201.179 kb on + strandat 201.185 kb on + strandat 201.186 kb on - strandat 201.200 kb on - strandat 201.213 kb on - strandat 201.237 kb on + strandat 201.241 kb on + strandat 201.241 kb on + strandat 201.242 kb on - strandat 201.242 kb on - strandat 201.322 kb on + strand, within CA264_21660at 201.322 kb on + strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.337 kb on + strand, within CA264_21660at 201.378 kb on + strand, within CA264_21660at 201.406 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.434 kb on - strand, within CA264_21660at 201.453 kb on - strand, within CA264_21660at 201.472 kb on + strand, within CA264_21660at 201.486 kb on + strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.565 kb on + strand, within CA264_21660at 201.571 kb on + strand, within CA264_21660at 201.572 kb on - strand, within CA264_21660at 201.611 kb on + strand, within CA264_21660at 201.612 kb on - strand, within CA264_21660at 201.667 kb on + strand, within CA264_21660at 201.672 kb on + strand, within CA264_21660at 201.768 kb on - strand, within CA264_21660at 201.817 kb on + strand, within CA264_21660at 201.839 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.913 kb on - strand, within CA264_21660at 202.048 kb on + strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.050 kb on + strandat 202.052 kb on + strandat 202.052 kb on + strandat 202.056 kb on + strandat 202.057 kb on - strandat 202.085 kb on + strandat 202.145 kb on + strandat 202.146 kb on - strandat 202.167 kb on - strandat 202.172 kb on + strandat 202.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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198,835 + CA264_21650 0.34 +0.3
198,940 + CA264_21650 0.41 +0.7
198,940 + CA264_21650 0.41 +0.2
199,010 - CA264_21650 0.45 +0.4
199,042 + CA264_21650 0.47 +1.1
199,043 - CA264_21650 0.47 -0.9
199,168 - CA264_21650 0.56 +0.5
199,176 + CA264_21650 0.56 -0.5
199,267 - CA264_21650 0.62 -0.0
199,267 - CA264_21650 0.62 +0.8
199,274 - CA264_21650 0.63 -0.1
199,274 - CA264_21650 0.63 -0.0
199,276 + CA264_21650 0.63 +1.1
199,276 + CA264_21650 0.63 -2.4
199,276 + CA264_21650 0.63 +0.7
199,276 + CA264_21650 0.63 -0.3
199,277 - CA264_21650 0.63 +0.3
199,277 - CA264_21650 0.63 +0.2
199,278 + CA264_21650 0.63 +0.3
199,279 - CA264_21650 0.63 +1.7
199,279 - CA264_21650 0.63 -0.3
199,279 - CA264_21650 0.63 -1.0
199,279 - CA264_21650 0.63 -0.1
199,309 + CA264_21650 0.65 -0.5
199,309 + CA264_21650 0.65 -0.0
199,309 + CA264_21650 0.65 -1.2
199,310 - CA264_21650 0.65 +0.0
199,327 + CA264_21650 0.66 -0.7
199,328 - CA264_21650 0.67 -0.4
199,331 - CA264_21650 0.67 +0.5
199,331 - CA264_21650 0.67 -0.0
199,428 + CA264_21650 0.73 +0.8
199,428 + CA264_21650 0.73 +0.8
199,438 + CA264_21650 0.74 +0.4
199,438 + CA264_21650 0.74 +0.2
199,439 - CA264_21650 0.74 +0.6
199,439 - CA264_21650 0.74 +0.7
199,468 + CA264_21650 0.76 +0.2
199,468 + CA264_21650 0.76 +0.5
199,504 - CA264_21650 0.78 -0.5
199,518 - CA264_21650 0.79 +0.5
199,558 + CA264_21650 0.82 +0.7
199,559 - CA264_21650 0.82 +0.1
199,560 + CA264_21650 0.82 +0.2
199,667 - CA264_21650 0.89 -0.6
199,678 + -0.4
199,706 - -0.0
199,706 - +0.7
199,737 + +0.2
199,738 - +0.4
199,741 + -0.2
199,741 + -0.1
199,742 - +0.2
199,742 - +0.3
199,742 - -0.9
199,763 + +1.0
199,763 + -0.7
199,764 - -0.7
199,764 - +0.3
199,764 - -0.0
199,811 - -0.1
199,834 - -0.8
199,834 - -0.2
199,835 + +1.3
199,849 + -0.0
199,849 + +0.1
199,850 - +1.1
199,851 + +0.2
199,851 + -1.6
199,852 - -0.2
199,852 - -0.2
199,852 - +0.6
199,853 + +0.2
199,854 - +1.1
199,854 - -1.2
199,943 + -1.3
199,974 - CA264_21655 0.10 -1.3
200,173 - CA264_21655 0.25 +0.1
200,177 + CA264_21655 0.25 +0.9
200,177 + CA264_21655 0.25 +0.2
200,177 + CA264_21655 0.25 +0.4
200,178 - CA264_21655 0.25 -0.3
200,178 - CA264_21655 0.25 -0.2
200,178 - CA264_21655 0.25 -0.2
200,236 + CA264_21655 0.30 -1.4
200,239 + CA264_21655 0.30 -0.5
200,261 + CA264_21655 0.31 -0.4
200,262 - CA264_21655 0.31 +0.0
200,281 + CA264_21655 0.33 +0.7
200,346 - CA264_21655 0.38 -0.5
200,347 + CA264_21655 0.38 -0.7
200,352 - CA264_21655 0.38 +1.2
200,390 + CA264_21655 0.41 -0.1
200,537 + CA264_21655 0.52 -0.3
200,538 - CA264_21655 0.52 -0.2
200,549 + CA264_21655 0.52 -0.3
200,562 + CA264_21655 0.53 +0.2
200,562 + CA264_21655 0.53 +0.4
200,563 - CA264_21655 0.53 +0.4
200,574 - CA264_21655 0.54 +0.6
200,576 - CA264_21655 0.54 -1.0
200,614 - CA264_21655 0.57 +0.3
200,614 - CA264_21655 0.57 -0.5
200,673 - CA264_21655 0.61 -1.3
200,704 + CA264_21655 0.64 -0.4
200,704 + CA264_21655 0.64 -0.5
200,715 + CA264_21655 0.65 -1.1
200,782 - CA264_21655 0.69 -0.2
200,798 + CA264_21655 0.71 -0.5
200,834 - CA264_21655 0.73 +0.5
200,855 - CA264_21655 0.75 -0.6
200,906 + CA264_21655 0.79 -0.0
200,962 + CA264_21655 0.83 -0.2
200,962 + CA264_21655 0.83 -0.2
200,963 - CA264_21655 0.83 +0.2
200,967 - CA264_21655 0.83 -0.2
201,080 + -2.0
201,133 + +0.0
201,179 + +0.0
201,179 + -0.3
201,185 + -0.1
201,186 - -0.0
201,200 - -1.2
201,213 - -0.0
201,237 + -1.3
201,241 + -0.6
201,241 + -0.4
201,242 - +1.9
201,242 - +0.5
201,322 + CA264_21660 0.13 -0.8
201,322 + CA264_21660 0.13 +0.3
201,323 - CA264_21660 0.13 -1.0
201,323 - CA264_21660 0.13 +0.3
201,323 - CA264_21660 0.13 +0.2
201,337 + CA264_21660 0.15 -1.2
201,378 + CA264_21660 0.19 +0.7
201,406 + CA264_21660 0.23 -0.2
201,433 + CA264_21660 0.26 -0.0
201,433 + CA264_21660 0.26 +0.1
201,433 + CA264_21660 0.26 +0.3
201,434 - CA264_21660 0.26 +0.1
201,453 - CA264_21660 0.28 -0.2
201,472 + CA264_21660 0.30 -0.3
201,486 + CA264_21660 0.32 +0.5
201,487 - CA264_21660 0.32 -0.8
201,487 - CA264_21660 0.32 -0.3
201,565 + CA264_21660 0.41 -0.1
201,571 + CA264_21660 0.42 -0.6
201,572 - CA264_21660 0.42 -0.5
201,611 + CA264_21660 0.47 -1.1
201,612 - CA264_21660 0.47 +0.3
201,667 + CA264_21660 0.53 -0.1
201,672 + CA264_21660 0.54 +0.2
201,768 - CA264_21660 0.65 -0.3
201,817 + CA264_21660 0.71 -0.5
201,839 - CA264_21660 0.73 -0.1
201,900 - CA264_21660 0.80 +0.4
201,900 - CA264_21660 0.80 +0.7
201,900 - CA264_21660 0.80 -0.7
201,913 - CA264_21660 0.82 -0.4
202,048 + +0.2
202,049 - -0.5
202,049 - -1.3
202,049 - +0.2
202,050 + -2.1
202,052 + -0.6
202,052 + -0.5
202,056 + -0.4
202,057 - +0.3
202,085 + -0.4
202,145 + +0.0
202,146 - -0.3
202,167 - +0.6
202,172 + +0.5
202,173 - +0.3

Or see this region's nucleotide sequence