Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19875 and CA264_19880 are separated by 88 nucleotides CA264_19880 and CA264_19885 overlap by 4 nucleotides CA264_19885 and CA264_19890 are separated by 82 nucleotides CA264_19890 and CA264_19895 are separated by 59 nucleotides
CA264_19875: CA264_19875 - RNA methyltransferase, at 4,586,099 to 4,586,428
_19875
CA264_19880: CA264_19880 - potassium transporter KtrA, at 4,586,517 to 4,587,209
_19880
CA264_19885: CA264_19885 - uridine kinase, at 4,587,206 to 4,587,826
_19885
CA264_19890: CA264_19890 - non-canonical purine NTP pyrophosphatase, at 4,587,909 to 4,588,487
_19890
CA264_19895: CA264_19895 - phosphoribosyltransferase, at 4,588,547 to 4,589,062
_19895
Position (kb)
4587
4588 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4586.283 kb on - strand, within CA264_19875 at 4586.294 kb on + strand, within CA264_19875 at 4586.475 kb on + strand at 4586.475 kb on + strand at 4586.476 kb on - strand at 4586.476 kb on - strand at 4586.488 kb on - strand at 4586.518 kb on + strand at 4587.215 kb on + strand at 4587.228 kb on - strand at 4587.228 kb on - strand at 4587.232 kb on - strand at 4587.232 kb on - strand at 4587.303 kb on + strand, within CA264_19885 at 4587.303 kb on + strand, within CA264_19885 at 4587.311 kb on - strand, within CA264_19885 at 4587.387 kb on - strand, within CA264_19885 at 4587.503 kb on + strand, within CA264_19885 at 4587.543 kb on - strand, within CA264_19885 at 4587.543 kb on - strand, within CA264_19885 at 4587.543 kb on - strand, within CA264_19885 at 4587.545 kb on + strand, within CA264_19885 at 4587.566 kb on - strand, within CA264_19885 at 4587.566 kb on - strand, within CA264_19885 at 4587.566 kb on - strand, within CA264_19885 at 4587.658 kb on + strand, within CA264_19885 at 4587.659 kb on - strand, within CA264_19885 at 4587.706 kb on - strand, within CA264_19885 at 4587.706 kb on - strand, within CA264_19885 at 4587.706 kb on - strand, within CA264_19885 at 4587.761 kb on - strand, within CA264_19885 at 4587.834 kb on + strand at 4587.870 kb on + strand at 4587.870 kb on + strand at 4587.870 kb on + strand at 4587.871 kb on - strand at 4587.871 kb on - strand at 4587.872 kb on + strand at 4587.872 kb on + strand at 4587.873 kb on - strand at 4587.873 kb on - strand at 4587.873 kb on - strand at 4587.873 kb on - strand at 4587.873 kb on - strand at 4587.873 kb on - strand at 4587.885 kb on + strand at 4587.885 kb on + strand at 4587.897 kb on - strand at 4588.022 kb on + strand, within CA264_19890 at 4588.072 kb on - strand, within CA264_19890 at 4588.073 kb on + strand, within CA264_19890 at 4588.073 kb on + strand, within CA264_19890 at 4588.074 kb on - strand, within CA264_19890 at 4588.074 kb on - strand, within CA264_19890 at 4588.074 kb on - strand, within CA264_19890 at 4588.238 kb on - strand, within CA264_19890 at 4588.238 kb on - strand, within CA264_19890 at 4588.304 kb on + strand, within CA264_19890 at 4588.322 kb on - strand, within CA264_19890 at 4588.378 kb on - strand, within CA264_19890 at 4588.415 kb on - strand, within CA264_19890 at 4588.415 kb on - strand, within CA264_19890 at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.511 kb on + strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.512 kb on - strand at 4588.513 kb on + strand at 4588.513 kb on + strand at 4588.514 kb on - strand at 4588.514 kb on - strand at 4588.514 kb on - strand at 4588.514 kb on - strand at 4588.516 kb on + strand at 4588.516 kb on + strand at 4588.516 kb on + strand at 4588.517 kb on - strand at 4588.518 kb on + strand at 4588.519 kb on - strand at 4588.519 kb on - strand at 4588.520 kb on + strand at 4588.520 kb on + strand at 4588.521 kb on - strand at 4588.521 kb on - strand at 4588.548 kb on + strand at 4588.549 kb on - strand at 4588.633 kb on - strand, within CA264_19895 at 4588.651 kb on - strand, within CA264_19895 at 4588.728 kb on + strand, within CA264_19895 at 4588.790 kb on - strand, within CA264_19895 at 4588.795 kb on + strand, within CA264_19895 at 4588.796 kb on - strand, within CA264_19895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 4,586,283 - CA264_19875 0.56 -1.0 4,586,294 + CA264_19875 0.59 -1.1 4,586,475 + -1.0 4,586,475 + -1.8 4,586,476 - -0.8 4,586,476 - -0.2 4,586,488 - -0.1 4,586,518 + -1.0 4,587,215 + -1.7 4,587,228 - +0.1 4,587,228 - -0.9 4,587,232 - -0.2 4,587,232 - -0.1 4,587,303 + CA264_19885 0.16 -0.4 4,587,303 + CA264_19885 0.16 +1.8 4,587,311 - CA264_19885 0.17 -2.0 4,587,387 - CA264_19885 0.29 -1.7 4,587,503 + CA264_19885 0.48 -0.9 4,587,543 - CA264_19885 0.54 +2.2 4,587,543 - CA264_19885 0.54 -0.7 4,587,543 - CA264_19885 0.54 -0.9 4,587,545 + CA264_19885 0.55 -0.2 4,587,566 - CA264_19885 0.58 +1.4 4,587,566 - CA264_19885 0.58 -1.2 4,587,566 - CA264_19885 0.58 -1.7 4,587,658 + CA264_19885 0.73 -0.7 4,587,659 - CA264_19885 0.73 -0.6 4,587,706 - CA264_19885 0.81 -1.1 4,587,706 - CA264_19885 0.81 -1.5 4,587,706 - CA264_19885 0.81 -0.8 4,587,761 - CA264_19885 0.89 -0.9 4,587,834 + -0.9 4,587,870 + -0.6 4,587,870 + +0.7 4,587,870 + -0.1 4,587,871 - -0.0 4,587,871 - -0.3 4,587,872 + -0.2 4,587,872 + -0.2 4,587,873 - -0.7 4,587,873 - -0.4 4,587,873 - +1.1 4,587,873 - -0.4 4,587,873 - -0.0 4,587,873 - +0.3 4,587,885 + +0.7 4,587,885 + -0.7 4,587,897 - -0.0 4,588,022 + CA264_19890 0.20 -0.1 4,588,072 - CA264_19890 0.28 -0.1 4,588,073 + CA264_19890 0.28 +1.3 4,588,073 + CA264_19890 0.28 -0.4 4,588,074 - CA264_19890 0.28 +0.1 4,588,074 - CA264_19890 0.28 +0.3 4,588,074 - CA264_19890 0.28 +0.2 4,588,238 - CA264_19890 0.57 -0.2 4,588,238 - CA264_19890 0.57 +0.8 4,588,304 + CA264_19890 0.68 -0.3 4,588,322 - CA264_19890 0.71 +0.5 4,588,378 - CA264_19890 0.81 -0.0 4,588,415 - CA264_19890 0.87 -0.1 4,588,415 - CA264_19890 0.87 +0.2 4,588,511 + +0.3 4,588,511 + -0.3 4,588,511 + -1.1 4,588,511 + +0.3 4,588,511 + -1.0 4,588,511 + +0.8 4,588,511 + +1.2 4,588,512 - -1.4 4,588,512 - -0.3 4,588,512 - +0.3 4,588,512 - +0.7 4,588,512 - -0.9 4,588,512 - -0.1 4,588,512 - -1.0 4,588,512 - +1.6 4,588,513 + +0.2 4,588,513 + +0.0 4,588,514 - +0.3 4,588,514 - -0.5 4,588,514 - -1.2 4,588,514 - -0.2 4,588,516 + +0.6 4,588,516 + +0.1 4,588,516 + -0.7 4,588,517 - -0.2 4,588,518 + -0.7 4,588,519 - -0.0 4,588,519 - +0.8 4,588,520 + -0.1 4,588,520 + -0.1 4,588,521 - +1.0 4,588,521 - +0.7 4,588,548 + -1.2 4,588,549 - +0.8 4,588,633 - CA264_19895 0.17 -0.0 4,588,651 - CA264_19895 0.20 +0.1 4,588,728 + CA264_19895 0.35 +0.4 4,588,790 - CA264_19895 0.47 -0.4 4,588,795 + CA264_19895 0.48 +0.5 4,588,796 - CA264_19895 0.48 +0.1
Or see this region's nucleotide sequence