Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19560 and CA264_19565 are separated by 116 nucleotides CA264_19565 and CA264_19570 overlap by 17 nucleotides CA264_19570 and CA264_19575 are separated by 203 nucleotides
CA264_19560: CA264_19560 - preprotein translocase subunit SecA, at 4,518,014 to 4,521,385
_19560
CA264_19565: CA264_19565 - 2-deoxyribose-5-phosphate aldolase, at 4,521,502 to 4,522,173
_19565
CA264_19570: CA264_19570 - sporulation protein, at 4,522,157 to 4,522,675
_19570
CA264_19575: CA264_19575 - N-acyl-L-amino acid amidohydrolase, at 4,522,879 to 4,524,069
_19575
Position (kb)
4521
4522
4523 Strain fitness (log2 ratio)
-1
0
1
2 at 4521.156 kb on + strand at 4521.208 kb on + strand at 4521.296 kb on + strand at 4521.383 kb on + strand at 4521.402 kb on + strand at 4521.496 kb on - strand at 4521.497 kb on + strand at 4521.497 kb on + strand at 4521.526 kb on + strand at 4521.526 kb on + strand at 4521.526 kb on + strand at 4521.526 kb on + strand at 4521.526 kb on + strand at 4521.527 kb on - strand at 4521.528 kb on + strand at 4521.529 kb on - strand at 4521.530 kb on + strand at 4521.530 kb on + strand at 4521.530 kb on + strand at 4521.601 kb on + strand, within CA264_19565 at 4521.632 kb on - strand, within CA264_19565 at 4521.678 kb on - strand, within CA264_19565 at 4521.713 kb on - strand, within CA264_19565 at 4521.730 kb on + strand, within CA264_19565 at 4521.818 kb on - strand, within CA264_19565 at 4521.818 kb on - strand, within CA264_19565 at 4521.828 kb on - strand, within CA264_19565 at 4521.964 kb on + strand, within CA264_19565 at 4521.978 kb on + strand, within CA264_19565 at 4521.978 kb on + strand, within CA264_19565 at 4522.056 kb on - strand, within CA264_19565 at 4522.124 kb on + strand at 4522.141 kb on - strand at 4522.142 kb on + strand at 4522.143 kb on - strand at 4522.143 kb on - strand at 4522.149 kb on - strand at 4522.149 kb on - strand at 4522.149 kb on - strand at 4522.152 kb on + strand at 4522.536 kb on - strand, within CA264_19570 at 4522.682 kb on - strand at 4522.697 kb on + strand at 4522.697 kb on + strand at 4522.743 kb on - strand at 4522.761 kb on + strand at 4522.787 kb on - strand at 4522.788 kb on + strand at 4522.788 kb on + strand at 4522.789 kb on - strand at 4522.825 kb on - strand at 4522.829 kb on + strand at 4522.829 kb on + strand at 4522.829 kb on + strand at 4522.861 kb on + strand at 4522.866 kb on + strand at 4522.866 kb on + strand at 4522.867 kb on - strand at 4522.867 kb on - strand at 4522.871 kb on + strand at 4522.874 kb on + strand at 4522.875 kb on - strand at 4522.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 4,521,156 + +0.2 4,521,208 + -0.1 4,521,296 + +0.5 4,521,383 + +0.3 4,521,402 + -0.4 4,521,496 - -0.7 4,521,497 + +0.1 4,521,497 + +0.5 4,521,526 + -0.1 4,521,526 + -0.3 4,521,526 + -0.7 4,521,526 + +0.7 4,521,526 + +0.1 4,521,527 - -1.1 4,521,528 + -0.5 4,521,529 - -0.5 4,521,530 + +0.1 4,521,530 + +0.1 4,521,530 + -0.1 4,521,601 + CA264_19565 0.15 -1.1 4,521,632 - CA264_19565 0.19 -0.4 4,521,678 - CA264_19565 0.26 -0.4 4,521,713 - CA264_19565 0.31 -1.2 4,521,730 + CA264_19565 0.34 +1.6 4,521,818 - CA264_19565 0.47 +1.5 4,521,818 - CA264_19565 0.47 -0.2 4,521,828 - CA264_19565 0.49 -0.1 4,521,964 + CA264_19565 0.69 -0.2 4,521,978 + CA264_19565 0.71 -0.5 4,521,978 + CA264_19565 0.71 -0.5 4,522,056 - CA264_19565 0.82 +2.1 4,522,124 + +1.7 4,522,141 - -0.7 4,522,142 + +0.0 4,522,143 - -0.5 4,522,143 - -0.2 4,522,149 - -0.4 4,522,149 - +0.0 4,522,149 - -0.1 4,522,152 + -0.0 4,522,536 - CA264_19570 0.73 -1.4 4,522,682 - -0.2 4,522,697 + -0.2 4,522,697 + -0.2 4,522,743 - +0.3 4,522,761 + -0.1 4,522,787 - +0.5 4,522,788 + +0.3 4,522,788 + +0.5 4,522,789 - -1.4 4,522,825 - +0.0 4,522,829 + +0.2 4,522,829 + +0.4 4,522,829 + -0.2 4,522,861 + +0.4 4,522,866 + -0.1 4,522,866 + +0.6 4,522,867 - -0.2 4,522,867 - +1.6 4,522,871 + +0.5 4,522,874 + -0.4 4,522,875 - -0.1 4,522,892 + +0.4
Or see this region's nucleotide sequence