Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19060

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19055 and CA264_19060 are separated by 83 nucleotidesCA264_19060 and CA264_19065 are separated by 6 nucleotidesCA264_19065 and CA264_19070 are separated by 160 nucleotides CA264_19055: CA264_19055 - epimerase, at 4,428,631 to 4,429,605 _19055 CA264_19060: CA264_19060 - hypothetical protein, at 4,429,689 to 4,431,086 _19060 CA264_19065: CA264_19065 - phosphosulfolactate synthase, at 4,431,093 to 4,431,866 _19065 CA264_19070: CA264_19070 - DUF368 domain-containing protein, at 4,432,027 to 4,432,926 _19070 Position (kb) 4429 4430 4431 4432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4428.732 kb on - strand, within CA264_19055at 4428.824 kb on - strand, within CA264_19055at 4428.854 kb on - strand, within CA264_19055at 4428.888 kb on - strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.911 kb on + strand, within CA264_19055at 4428.939 kb on + strand, within CA264_19055at 4429.180 kb on + strand, within CA264_19055at 4429.229 kb on + strand, within CA264_19055at 4429.322 kb on - strand, within CA264_19055at 4429.625 kb on + strandat 4429.640 kb on + strandat 4429.640 kb on + strandat 4429.641 kb on - strandat 4429.641 kb on - strandat 4429.641 kb on - strandat 4429.645 kb on - strandat 4429.645 kb on - strandat 4429.798 kb on - strandat 4429.799 kb on + strandat 4429.813 kb on - strandat 4429.815 kb on - strandat 4429.832 kb on + strand, within CA264_19060at 4429.832 kb on + strand, within CA264_19060at 4429.833 kb on - strand, within CA264_19060at 4429.833 kb on - strand, within CA264_19060at 4429.833 kb on - strand, within CA264_19060at 4429.873 kb on - strand, within CA264_19060at 4430.047 kb on + strand, within CA264_19060at 4430.047 kb on + strand, within CA264_19060at 4430.048 kb on - strand, within CA264_19060at 4430.048 kb on - strand, within CA264_19060at 4430.048 kb on - strand, within CA264_19060at 4430.093 kb on + strand, within CA264_19060at 4430.093 kb on + strand, within CA264_19060at 4430.095 kb on + strand, within CA264_19060at 4430.096 kb on - strand, within CA264_19060at 4430.098 kb on - strand, within CA264_19060at 4430.098 kb on - strand, within CA264_19060at 4430.098 kb on - strand, within CA264_19060at 4430.102 kb on + strand, within CA264_19060at 4430.155 kb on - strand, within CA264_19060at 4430.157 kb on + strand, within CA264_19060at 4430.158 kb on - strand, within CA264_19060at 4430.158 kb on - strand, within CA264_19060at 4430.214 kb on + strand, within CA264_19060at 4430.215 kb on - strand, within CA264_19060at 4430.286 kb on + strand, within CA264_19060at 4430.292 kb on + strand, within CA264_19060at 4430.327 kb on + strand, within CA264_19060at 4430.327 kb on + strand, within CA264_19060at 4430.327 kb on + strand, within CA264_19060at 4430.328 kb on - strand, within CA264_19060at 4430.367 kb on + strand, within CA264_19060at 4430.442 kb on + strand, within CA264_19060at 4430.444 kb on + strand, within CA264_19060at 4430.445 kb on - strand, within CA264_19060at 4430.505 kb on + strand, within CA264_19060at 4430.505 kb on + strand, within CA264_19060at 4430.510 kb on + strand, within CA264_19060at 4430.670 kb on - strand, within CA264_19060at 4430.876 kb on - strand, within CA264_19060at 4430.913 kb on + strand, within CA264_19060at 4430.916 kb on + strand, within CA264_19060at 4430.931 kb on + strand, within CA264_19060at 4430.932 kb on - strand, within CA264_19060at 4430.953 kb on - strandat 4430.965 kb on - strandat 4431.896 kb on - strandat 4431.896 kb on - strandat 4431.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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4,428,732 - CA264_19055 0.10 +0.3
4,428,824 - CA264_19055 0.20 -1.0
4,428,854 - CA264_19055 0.23 -2.4
4,428,888 - CA264_19055 0.26 +0.1
4,428,911 + CA264_19055 0.29 -1.9
4,428,911 + CA264_19055 0.29 -2.4
4,428,911 + CA264_19055 0.29 -3.4
4,428,939 + CA264_19055 0.32 +0.5
4,429,180 + CA264_19055 0.56 -2.0
4,429,229 + CA264_19055 0.61 -2.7
4,429,322 - CA264_19055 0.71 -2.4
4,429,625 + -2.2
4,429,640 + -1.6
4,429,640 + -1.0
4,429,641 - -1.1
4,429,641 - -1.6
4,429,641 - -1.0
4,429,645 - -0.0
4,429,645 - -0.4
4,429,798 - -0.5
4,429,799 + +0.3
4,429,813 - -0.2
4,429,815 - -0.6
4,429,832 + CA264_19060 0.10 -1.0
4,429,832 + CA264_19060 0.10 -0.4
4,429,833 - CA264_19060 0.10 +0.4
4,429,833 - CA264_19060 0.10 -0.1
4,429,833 - CA264_19060 0.10 -0.5
4,429,873 - CA264_19060 0.13 -0.4
4,430,047 + CA264_19060 0.26 -0.1
4,430,047 + CA264_19060 0.26 -0.1
4,430,048 - CA264_19060 0.26 -0.8
4,430,048 - CA264_19060 0.26 -0.4
4,430,048 - CA264_19060 0.26 +0.3
4,430,093 + CA264_19060 0.29 -0.5
4,430,093 + CA264_19060 0.29 -1.5
4,430,095 + CA264_19060 0.29 -0.1
4,430,096 - CA264_19060 0.29 -0.5
4,430,098 - CA264_19060 0.29 -1.5
4,430,098 - CA264_19060 0.29 -0.1
4,430,098 - CA264_19060 0.29 -0.3
4,430,102 + CA264_19060 0.30 +0.4
4,430,155 - CA264_19060 0.33 -2.1
4,430,157 + CA264_19060 0.33 +0.1
4,430,158 - CA264_19060 0.34 +2.5
4,430,158 - CA264_19060 0.34 -0.5
4,430,214 + CA264_19060 0.38 -0.7
4,430,215 - CA264_19060 0.38 -0.4
4,430,286 + CA264_19060 0.43 -0.3
4,430,292 + CA264_19060 0.43 +0.6
4,430,327 + CA264_19060 0.46 +0.6
4,430,327 + CA264_19060 0.46 +0.5
4,430,327 + CA264_19060 0.46 -0.2
4,430,328 - CA264_19060 0.46 +0.9
4,430,367 + CA264_19060 0.48 -0.4
4,430,442 + CA264_19060 0.54 -0.5
4,430,444 + CA264_19060 0.54 -0.9
4,430,445 - CA264_19060 0.54 -0.3
4,430,505 + CA264_19060 0.58 +1.2
4,430,505 + CA264_19060 0.58 +0.1
4,430,510 + CA264_19060 0.59 +0.1
4,430,670 - CA264_19060 0.70 -0.7
4,430,876 - CA264_19060 0.85 -0.1
4,430,913 + CA264_19060 0.88 +1.0
4,430,916 + CA264_19060 0.88 +0.7
4,430,931 + CA264_19060 0.89 -0.2
4,430,932 - CA264_19060 0.89 -0.9
4,430,953 - -0.1
4,430,965 - -0.1
4,431,896 - +0.8
4,431,896 - -0.4
4,431,963 - -1.4

Or see this region's nucleotide sequence