Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16925

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16915 and CA264_16920 are separated by 101 nucleotidesCA264_16920 and CA264_16925 are separated by 9 nucleotidesCA264_16925 and CA264_16930 are separated by 174 nucleotidesCA264_16930 and CA264_16935 are separated by 110 nucleotides CA264_16915: CA264_16915 - hypothetical protein, at 3,938,975 to 3,940,822 _16915 CA264_16920: CA264_16920 - zinc/iron permease, at 3,940,924 to 3,941,673 _16920 CA264_16925: CA264_16925 - SAM-dependent methyltransferase, at 3,941,683 to 3,942,426 _16925 CA264_16930: CA264_16930 - hypothetical protein, at 3,942,601 to 3,942,906 _16930 CA264_16935: CA264_16935 - hypothetical protein, at 3,943,017 to 3,943,574 _16935 Position (kb) 3941 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1at 3940.726 kb on - strandat 3940.738 kb on + strandat 3940.739 kb on - strandat 3940.783 kb on - strandat 3940.783 kb on - strandat 3940.881 kb on + strandat 3940.921 kb on + strandat 3941.659 kb on + strandat 3941.665 kb on + strandat 3941.665 kb on + strandat 3941.701 kb on + strandat 3941.701 kb on + strandat 3941.702 kb on - strandat 3941.744 kb on + strandat 3941.784 kb on + strand, within CA264_16925at 3941.785 kb on - strand, within CA264_16925at 3941.785 kb on - strand, within CA264_16925at 3941.837 kb on + strand, within CA264_16925at 3941.837 kb on + strand, within CA264_16925at 3941.838 kb on - strand, within CA264_16925at 3941.917 kb on + strand, within CA264_16925at 3942.051 kb on + strand, within CA264_16925at 3942.066 kb on - strand, within CA264_16925at 3942.236 kb on + strand, within CA264_16925at 3942.302 kb on + strand, within CA264_16925at 3942.302 kb on + strand, within CA264_16925at 3942.361 kb on + strandat 3942.361 kb on + strandat 3942.362 kb on - strandat 3942.368 kb on + strandat 3942.368 kb on + strandat 3942.371 kb on + strandat 3942.372 kb on - strandat 3942.459 kb on - strandat 3942.468 kb on - strandat 3942.528 kb on - strandat 3942.649 kb on + strand, within CA264_16930at 3942.701 kb on - strand, within CA264_16930at 3942.773 kb on + strand, within CA264_16930at 3942.774 kb on - strand, within CA264_16930at 3942.774 kb on - strandat 3942.774 kb on - strand, within CA264_16930at 3942.774 kb on - strand, within CA264_16930at 3942.801 kb on - strand, within CA264_16930at 3942.884 kb on - strandat 3942.884 kb on - strandat 3942.890 kb on - strandat 3942.892 kb on + strandat 3942.893 kb on - strandat 3942.975 kb on + strandat 3943.002 kb on + strandat 3943.002 kb on + strandat 3943.012 kb on + strandat 3943.101 kb on + strand, within CA264_16935at 3943.294 kb on + strand, within CA264_16935

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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3,940,726 - -0.1
3,940,738 + +1.0
3,940,739 - +0.3
3,940,783 - -0.2
3,940,783 - +0.1
3,940,881 + -0.6
3,940,921 + -0.0
3,941,659 + +0.9
3,941,665 + +0.2
3,941,665 + +0.3
3,941,701 + +0.2
3,941,701 + -0.5
3,941,702 - -1.0
3,941,744 + +0.2
3,941,784 + CA264_16925 0.14 -0.2
3,941,785 - CA264_16925 0.14 +0.2
3,941,785 - CA264_16925 0.14 +0.1
3,941,837 + CA264_16925 0.21 -1.1
3,941,837 + CA264_16925 0.21 -0.6
3,941,838 - CA264_16925 0.21 -1.2
3,941,917 + CA264_16925 0.31 -0.3
3,942,051 + CA264_16925 0.49 -0.4
3,942,066 - CA264_16925 0.51 -2.1
3,942,236 + CA264_16925 0.74 -1.9
3,942,302 + CA264_16925 0.83 -0.5
3,942,302 + CA264_16925 0.83 -0.0
3,942,361 + -0.9
3,942,361 + -1.3
3,942,362 - -0.8
3,942,368 + -0.1
3,942,368 + +1.5
3,942,371 + -0.8
3,942,372 - -0.6
3,942,459 - -0.3
3,942,468 - -0.9
3,942,528 - -0.9
3,942,649 + CA264_16930 0.16 -0.4
3,942,701 - CA264_16930 0.33 +0.2
3,942,773 + CA264_16930 0.56 +0.8
3,942,774 - CA264_16930 0.57 +0.2
3,942,774 - +0.9
3,942,774 - CA264_16930 0.57 -0.2
3,942,774 - CA264_16930 0.57 -0.5
3,942,801 - CA264_16930 0.65 +0.4
3,942,884 - -0.5
3,942,884 - -0.0
3,942,890 - -0.0
3,942,892 + -0.4
3,942,893 - -1.8
3,942,975 + -0.6
3,943,002 + +0.1
3,943,002 + -0.4
3,943,012 + +1.0
3,943,101 + CA264_16935 0.15 -2.6
3,943,294 + CA264_16935 0.50 -2.8

Or see this region's nucleotide sequence