Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13185

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13180 and CA264_13185 are separated by 14 nucleotidesCA264_13185 and CA264_13190 are separated by 140 nucleotides CA264_13180: CA264_13180 - gamma-glutamyltransferase, at 3,070,962 to 3,072,695 _13180 CA264_13185: CA264_13185 - hypothetical protein, at 3,072,710 to 3,073,102 _13185 CA264_13190: CA264_13190 - hypothetical protein, at 3,073,243 to 3,076,728 _13190 Position (kb) 3072 3073 3074Strain fitness (log2 ratio) -2 -1 0 1 2at 3071.805 kb on + strand, within CA264_13180at 3071.806 kb on - strand, within CA264_13180at 3071.806 kb on - strand, within CA264_13180at 3071.970 kb on + strand, within CA264_13180at 3071.998 kb on + strand, within CA264_13180at 3072.137 kb on + strand, within CA264_13180at 3072.137 kb on + strand, within CA264_13180at 3072.137 kb on + strand, within CA264_13180at 3072.233 kb on - strand, within CA264_13180at 3072.313 kb on + strand, within CA264_13180at 3072.378 kb on + strand, within CA264_13180at 3072.379 kb on - strand, within CA264_13180at 3072.385 kb on + strand, within CA264_13180at 3072.386 kb on - strand, within CA264_13180at 3072.521 kb on - strand, within CA264_13180at 3072.581 kb on + strandat 3072.613 kb on + strandat 3072.647 kb on - strandat 3072.693 kb on + strandat 3072.694 kb on - strandat 3072.713 kb on + strandat 3072.714 kb on - strandat 3072.714 kb on - strandat 3072.754 kb on - strand, within CA264_13185at 3072.754 kb on - strand, within CA264_13185at 3072.754 kb on - strand, within CA264_13185at 3072.787 kb on + strand, within CA264_13185at 3072.819 kb on - strand, within CA264_13185at 3072.914 kb on + strand, within CA264_13185at 3072.998 kb on - strand, within CA264_13185at 3073.032 kb on + strand, within CA264_13185at 3073.076 kb on - strandat 3073.082 kb on + strandat 3073.082 kb on + strandat 3073.116 kb on - strandat 3073.118 kb on - strandat 3073.126 kb on + strandat 3073.161 kb on - strandat 3073.161 kb on - strandat 3073.166 kb on - strandat 3073.301 kb on + strandat 3073.301 kb on + strandat 3073.302 kb on - strandat 3073.302 kb on - strandat 3073.302 kb on - strandat 3073.383 kb on + strandat 3073.384 kb on - strandat 3073.384 kb on - strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.456 kb on + strandat 3073.457 kb on - strandat 3073.514 kb on - strandat 3073.514 kb on - strandat 3073.515 kb on + strandat 3073.527 kb on + strandat 3073.543 kb on + strandat 3073.544 kb on - strandat 3073.544 kb on - strandat 3073.573 kb on + strandat 3073.605 kb on - strand, within CA264_13190at 3073.675 kb on - strand, within CA264_13190at 3073.733 kb on + strand, within CA264_13190at 3073.908 kb on + strand, within CA264_13190at 3073.916 kb on - strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.929 kb on + strand, within CA264_13190at 3073.980 kb on + strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.981 kb on - strand, within CA264_13190at 3073.992 kb on + strand, within CA264_13190at 3073.992 kb on + strand, within CA264_13190at 3073.993 kb on - strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3073.994 kb on + strand, within CA264_13190at 3074.060 kb on + strand, within CA264_13190at 3074.061 kb on - strand, within CA264_13190at 3074.064 kb on + strand, within CA264_13190at 3074.065 kb on - strand, within CA264_13190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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3,071,805 + CA264_13180 0.49 -0.1
3,071,806 - CA264_13180 0.49 -0.2
3,071,806 - CA264_13180 0.49 -0.7
3,071,970 + CA264_13180 0.58 -0.6
3,071,998 + CA264_13180 0.60 -0.1
3,072,137 + CA264_13180 0.68 +0.0
3,072,137 + CA264_13180 0.68 +0.0
3,072,137 + CA264_13180 0.68 -0.6
3,072,233 - CA264_13180 0.73 +0.4
3,072,313 + CA264_13180 0.78 +0.9
3,072,378 + CA264_13180 0.82 +2.4
3,072,379 - CA264_13180 0.82 -0.5
3,072,385 + CA264_13180 0.82 -1.0
3,072,386 - CA264_13180 0.82 -0.4
3,072,521 - CA264_13180 0.90 -0.2
3,072,581 + +0.1
3,072,613 + +0.9
3,072,647 - -0.4
3,072,693 + +0.4
3,072,694 - -0.4
3,072,713 + -0.8
3,072,714 - -0.6
3,072,714 - -0.6
3,072,754 - CA264_13185 0.11 -0.5
3,072,754 - CA264_13185 0.11 +0.2
3,072,754 - CA264_13185 0.11 +0.1
3,072,787 + CA264_13185 0.20 -0.3
3,072,819 - CA264_13185 0.28 -1.1
3,072,914 + CA264_13185 0.52 -0.5
3,072,998 - CA264_13185 0.73 +0.0
3,073,032 + CA264_13185 0.82 -0.4
3,073,076 - -0.4
3,073,082 + -0.0
3,073,082 + -0.4
3,073,116 - -0.4
3,073,118 - -1.1
3,073,126 + +0.1
3,073,161 - +0.2
3,073,161 - -2.0
3,073,166 - +0.0
3,073,301 + -0.4
3,073,301 + +0.7
3,073,302 - -1.2
3,073,302 - -0.2
3,073,302 - -0.4
3,073,383 + -0.1
3,073,384 - -0.0
3,073,384 - -0.0
3,073,456 + +0.3
3,073,456 + -0.0
3,073,456 + +0.0
3,073,456 + -0.4
3,073,456 + +0.2
3,073,457 - +0.6
3,073,514 - -0.1
3,073,514 - +0.5
3,073,515 + -1.2
3,073,527 + -0.3
3,073,543 + -0.5
3,073,544 - +0.2
3,073,544 - -0.3
3,073,573 + -2.3
3,073,605 - CA264_13190 0.10 -0.6
3,073,675 - CA264_13190 0.12 -0.2
3,073,733 + CA264_13190 0.14 -0.1
3,073,908 + CA264_13190 0.19 -0.7
3,073,916 - CA264_13190 0.19 -1.4
3,073,929 + CA264_13190 0.20 -0.3
3,073,929 + CA264_13190 0.20 +0.1
3,073,929 + CA264_13190 0.20 -0.3
3,073,980 + CA264_13190 0.21 -0.9
3,073,981 - CA264_13190 0.21 +0.5
3,073,981 - CA264_13190 0.21 +0.7
3,073,981 - CA264_13190 0.21 -1.8
3,073,992 + CA264_13190 0.21 -0.2
3,073,992 + CA264_13190 0.21 -0.3
3,073,993 - CA264_13190 0.22 +0.2
3,073,994 + CA264_13190 0.22 +0.0
3,073,994 + CA264_13190 0.22 -0.1
3,073,994 + CA264_13190 0.22 -1.2
3,074,060 + CA264_13190 0.23 +1.1
3,074,061 - CA264_13190 0.23 -0.2
3,074,064 + CA264_13190 0.24 -0.6
3,074,065 - CA264_13190 0.24 -0.5

Or see this region's nucleotide sequence