Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11655

Experiment: m.b. Vancomycin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11655 and CA264_11660 are separated by 154 nucleotidesCA264_11660 and CA264_11665 are separated by 49 nucleotides CA264_11655: CA264_11655 - hypothetical protein, at 2,719,504 to 2,719,740 _11655 CA264_11660: CA264_11660 - hypothetical protein, at 2,719,895 to 2,720,293 _11660 CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113 _11665 Position (kb) 2719 2720Strain fitness (log2 ratio) -1 0 1 2at 2718.510 kb on + strandat 2718.549 kb on + strandat 2718.645 kb on + strandat 2718.645 kb on + strandat 2718.646 kb on - strandat 2718.646 kb on - strandat 2718.646 kb on - strandat 2718.646 kb on - strandat 2718.646 kb on - strandat 2718.650 kb on + strandat 2718.678 kb on - strandat 2718.690 kb on - strandat 2718.717 kb on + strandat 2718.738 kb on + strandat 2718.800 kb on + strandat 2718.801 kb on - strandat 2718.805 kb on + strandat 2718.805 kb on + strandat 2718.806 kb on - strandat 2718.808 kb on + strandat 2718.809 kb on - strandat 2718.809 kb on - strandat 2718.823 kb on - strandat 2718.847 kb on - strandat 2718.867 kb on + strandat 2718.892 kb on - strandat 2718.927 kb on - strandat 2718.940 kb on + strandat 2719.002 kb on + strandat 2719.003 kb on - strandat 2719.023 kb on - strandat 2719.023 kb on - strandat 2719.026 kb on - strandat 2719.052 kb on + strandat 2719.053 kb on - strandat 2719.053 kb on - strandat 2719.053 kb on - strandat 2719.056 kb on - strandat 2719.075 kb on - strandat 2719.075 kb on - strandat 2719.109 kb on + strandat 2719.109 kb on + strandat 2719.120 kb on - strandat 2719.120 kb on - strandat 2719.156 kb on + strandat 2719.157 kb on - strandat 2719.216 kb on - strandat 2719.216 kb on - strandat 2719.219 kb on - strandat 2719.319 kb on - strandat 2719.399 kb on + strandat 2719.412 kb on - strandat 2719.417 kb on - strandat 2719.417 kb on - strandat 2719.420 kb on + strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.424 kb on + strandat 2719.429 kb on + strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.467 kb on - strandat 2719.624 kb on + strand, within CA264_11655at 2719.624 kb on + strand, within CA264_11655at 2720.310 kb on + strandat 2720.327 kb on + strandat 2720.349 kb on - strandat 2720.386 kb on - strandat 2720.585 kb on - strand, within CA264_11665at 2720.721 kb on + strand, within CA264_11665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
remove
2,718,510 + -0.0
2,718,549 + -0.1
2,718,645 + +0.5
2,718,645 + +0.5
2,718,646 - -0.1
2,718,646 - +0.2
2,718,646 - +0.2
2,718,646 - -0.6
2,718,646 - +0.2
2,718,650 + +0.3
2,718,678 - -0.1
2,718,690 - -0.0
2,718,717 + -0.0
2,718,738 + +0.4
2,718,800 + +0.6
2,718,801 - -1.0
2,718,805 + -0.1
2,718,805 + -0.1
2,718,806 - -0.3
2,718,808 + +2.0
2,718,809 - +0.0
2,718,809 - -0.4
2,718,823 - -0.6
2,718,847 - -0.1
2,718,867 + -0.3
2,718,892 - +0.3
2,718,927 - +0.9
2,718,940 + +1.3
2,719,002 + +0.1
2,719,003 - +0.8
2,719,023 - -0.2
2,719,023 - +1.3
2,719,026 - +0.2
2,719,052 + +0.1
2,719,053 - -0.2
2,719,053 - -0.7
2,719,053 - +0.1
2,719,056 - +0.5
2,719,075 - -0.4
2,719,075 - -0.2
2,719,109 + +0.5
2,719,109 + -0.1
2,719,120 - +0.4
2,719,120 - -0.1
2,719,156 + -0.7
2,719,157 - -0.1
2,719,216 - -0.5
2,719,216 - +0.8
2,719,219 - -0.0
2,719,319 - -1.1
2,719,399 + +0.4
2,719,412 - -0.0
2,719,417 - +0.1
2,719,417 - -1.2
2,719,420 + +0.6
2,719,421 - -0.9
2,719,421 - -0.2
2,719,421 - +0.0
2,719,421 - +0.4
2,719,424 + +0.0
2,719,429 + -0.3
2,719,430 - +0.8
2,719,430 - -0.8
2,719,430 - -0.4
2,719,430 - -0.1
2,719,467 - -0.3
2,719,624 + CA264_11655 0.51 -0.9
2,719,624 + CA264_11655 0.51 +0.0
2,720,310 + +0.2
2,720,327 + -1.2
2,720,349 - -0.4
2,720,386 - -0.1
2,720,585 - CA264_11665 0.31 -0.4
2,720,721 + CA264_11665 0.49 +0.2

Or see this region's nucleotide sequence