Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09830

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09825 and CA264_09830 are separated by 9 nucleotidesCA264_09830 and CA264_09835 are separated by 288 nucleotides CA264_09825: CA264_09825 - hypothetical protein, at 2,282,068 to 2,284,521 _09825 CA264_09830: CA264_09830 - hypothetical protein, at 2,284,531 to 2,287,704 _09830 CA264_09835: CA264_09835 - hypothetical protein, at 2,287,993 to 2,288,205 _09835 Position (kb) 2284 2285 2286 2287 2288Strain fitness (log2 ratio) -2 -1 0 1 2at 2283.560 kb on + strand, within CA264_09825at 2283.604 kb on + strand, within CA264_09825at 2283.609 kb on + strand, within CA264_09825at 2283.609 kb on + strand, within CA264_09825at 2283.609 kb on + strand, within CA264_09825at 2283.610 kb on - strand, within CA264_09825at 2283.677 kb on + strand, within CA264_09825at 2283.713 kb on + strand, within CA264_09825at 2283.746 kb on - strand, within CA264_09825at 2283.815 kb on + strand, within CA264_09825at 2283.815 kb on + strand, within CA264_09825at 2283.816 kb on - strand, within CA264_09825at 2283.818 kb on + strand, within CA264_09825at 2283.864 kb on - strand, within CA264_09825at 2283.900 kb on - strand, within CA264_09825at 2284.024 kb on + strand, within CA264_09825at 2284.029 kb on - strand, within CA264_09825at 2284.039 kb on + strand, within CA264_09825at 2284.070 kb on - strand, within CA264_09825at 2284.118 kb on + strand, within CA264_09825at 2284.140 kb on + strand, within CA264_09825at 2284.140 kb on + strand, within CA264_09825at 2284.141 kb on - strand, within CA264_09825at 2284.141 kb on - strand, within CA264_09825at 2284.143 kb on - strand, within CA264_09825at 2284.143 kb on - strand, within CA264_09825at 2284.143 kb on - strand, within CA264_09825at 2284.209 kb on - strand, within CA264_09825at 2284.229 kb on + strand, within CA264_09825at 2284.288 kb on + strandat 2284.304 kb on + strandat 2284.309 kb on + strandat 2284.310 kb on - strandat 2284.310 kb on - strandat 2284.310 kb on - strandat 2284.337 kb on + strandat 2284.372 kb on + strandat 2284.373 kb on - strandat 2284.391 kb on - strandat 2284.397 kb on - strandat 2284.484 kb on - strandat 2284.502 kb on - strandat 2284.502 kb on - strandat 2284.510 kb on + strandat 2284.510 kb on + strandat 2284.511 kb on - strandat 2284.532 kb on + strandat 2284.541 kb on - strandat 2284.541 kb on - strandat 2284.595 kb on + strandat 2284.598 kb on + strandat 2284.610 kb on + strandat 2284.675 kb on + strandat 2284.807 kb on + strandat 2284.847 kb on + strandat 2284.872 kb on - strand, within CA264_09830at 2285.091 kb on + strand, within CA264_09830at 2285.091 kb on + strand, within CA264_09830at 2285.122 kb on - strand, within CA264_09830at 2285.159 kb on + strand, within CA264_09830at 2285.160 kb on - strand, within CA264_09830at 2285.163 kb on + strand, within CA264_09830at 2285.267 kb on + strand, within CA264_09830at 2285.420 kb on + strand, within CA264_09830at 2285.478 kb on + strand, within CA264_09830at 2285.500 kb on + strand, within CA264_09830at 2285.501 kb on - strand, within CA264_09830at 2285.501 kb on - strand, within CA264_09830at 2285.673 kb on + strand, within CA264_09830at 2285.674 kb on - strand, within CA264_09830at 2285.677 kb on + strand, within CA264_09830at 2285.746 kb on - strand, within CA264_09830at 2285.811 kb on + strand, within CA264_09830at 2285.872 kb on + strand, within CA264_09830at 2285.893 kb on + strand, within CA264_09830at 2285.893 kb on + strand, within CA264_09830at 2285.894 kb on - strand, within CA264_09830at 2285.934 kb on + strand, within CA264_09830at 2285.935 kb on - strand, within CA264_09830at 2285.937 kb on - strand, within CA264_09830at 2285.957 kb on + strand, within CA264_09830at 2285.961 kb on + strand, within CA264_09830at 2286.150 kb on + strand, within CA264_09830at 2286.151 kb on - strand, within CA264_09830at 2286.239 kb on - strand, within CA264_09830at 2286.433 kb on - strand, within CA264_09830at 2286.433 kb on - strand, within CA264_09830at 2286.514 kb on - strand, within CA264_09830at 2286.564 kb on + strand, within CA264_09830at 2286.564 kb on + strand, within CA264_09830at 2286.565 kb on - strand, within CA264_09830at 2286.566 kb on + strand, within CA264_09830at 2286.566 kb on + strand, within CA264_09830at 2286.566 kb on + strand, within CA264_09830at 2286.567 kb on - strand, within CA264_09830at 2286.567 kb on - strand, within CA264_09830at 2286.628 kb on + strand, within CA264_09830at 2286.629 kb on - strand, within CA264_09830at 2286.738 kb on + strand, within CA264_09830at 2286.739 kb on - strand, within CA264_09830at 2286.739 kb on - strand, within CA264_09830at 2286.742 kb on + strand, within CA264_09830at 2286.742 kb on + strand, within CA264_09830at 2286.742 kb on + strand, within CA264_09830at 2286.742 kb on + strand, within CA264_09830at 2286.743 kb on - strand, within CA264_09830at 2286.793 kb on + strand, within CA264_09830at 2286.853 kb on + strand, within CA264_09830at 2286.926 kb on - strand, within CA264_09830at 2287.033 kb on + strand, within CA264_09830at 2287.042 kb on + strand, within CA264_09830at 2287.179 kb on - strand, within CA264_09830at 2287.210 kb on + strand, within CA264_09830at 2287.211 kb on - strand, within CA264_09830at 2287.211 kb on - strand, within CA264_09830at 2287.215 kb on - strand, within CA264_09830at 2287.238 kb on + strand, within CA264_09830at 2287.276 kb on - strand, within CA264_09830at 2287.298 kb on + strand, within CA264_09830at 2287.319 kb on + strand, within CA264_09830at 2287.319 kb on + strand, within CA264_09830at 2287.320 kb on - strand, within CA264_09830at 2287.320 kb on - strand, within CA264_09830at 2287.322 kb on + strandat 2287.322 kb on + strand, within CA264_09830at 2287.323 kb on - strand, within CA264_09830at 2287.444 kb on - strandat 2287.444 kb on - strandat 2287.451 kb on + strandat 2287.454 kb on + strandat 2287.455 kb on - strandat 2287.460 kb on + strandat 2287.460 kb on + strandat 2287.461 kb on - strandat 2287.470 kb on + strandat 2287.628 kb on - strandat 2287.670 kb on - strandat 2287.676 kb on + strandat 2287.680 kb on - strandat 2287.684 kb on + strandat 2287.684 kb on + strandat 2287.709 kb on - strandat 2287.719 kb on + strandat 2287.994 kb on + strandat 2287.994 kb on + strandat 2287.994 kb on + strandat 2287.995 kb on - strandat 2288.416 kb on + strandat 2288.416 kb on + strandat 2288.429 kb on - strandat 2288.433 kb on - strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.661 kb on + strandat 2288.679 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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2,283,560 + CA264_09825 0.61 +0.2
2,283,604 + CA264_09825 0.63 +1.3
2,283,609 + CA264_09825 0.63 -0.4
2,283,609 + CA264_09825 0.63 -0.0
2,283,609 + CA264_09825 0.63 -0.4
2,283,610 - CA264_09825 0.63 +0.1
2,283,677 + CA264_09825 0.66 -1.3
2,283,713 + CA264_09825 0.67 -0.6
2,283,746 - CA264_09825 0.68 +0.0
2,283,815 + CA264_09825 0.71 -0.2
2,283,815 + CA264_09825 0.71 +0.9
2,283,816 - CA264_09825 0.71 +0.1
2,283,818 + CA264_09825 0.71 -0.5
2,283,864 - CA264_09825 0.73 +0.3
2,283,900 - CA264_09825 0.75 -0.5
2,284,024 + CA264_09825 0.80 -0.2
2,284,029 - CA264_09825 0.80 +0.7
2,284,039 + CA264_09825 0.80 +0.5
2,284,070 - CA264_09825 0.82 +0.2
2,284,118 + CA264_09825 0.84 -0.1
2,284,140 + CA264_09825 0.84 -0.1
2,284,140 + CA264_09825 0.84 -0.5
2,284,141 - CA264_09825 0.84 -0.1
2,284,141 - CA264_09825 0.84 -0.3
2,284,143 - CA264_09825 0.85 -0.1
2,284,143 - CA264_09825 0.85 +0.5
2,284,143 - CA264_09825 0.85 -0.3
2,284,209 - CA264_09825 0.87 -1.6
2,284,229 + CA264_09825 0.88 -0.2
2,284,288 + -1.3
2,284,304 + -2.4
2,284,309 + -0.4
2,284,310 - -0.6
2,284,310 - +1.8
2,284,310 - -0.0
2,284,337 + -0.2
2,284,372 + -0.1
2,284,373 - +0.4
2,284,391 - +0.2
2,284,397 - +0.8
2,284,484 - -0.4
2,284,502 - -0.4
2,284,502 - +0.0
2,284,510 + -0.4
2,284,510 + -0.3
2,284,511 - -0.2
2,284,532 + +0.3
2,284,541 - -0.6
2,284,541 - -0.1
2,284,595 + -0.5
2,284,598 + -0.4
2,284,610 + -0.1
2,284,675 + +0.3
2,284,807 + -1.0
2,284,847 + +0.3
2,284,872 - CA264_09830 0.11 -1.0
2,285,091 + CA264_09830 0.18 -0.2
2,285,091 + CA264_09830 0.18 -0.3
2,285,122 - CA264_09830 0.19 +1.6
2,285,159 + CA264_09830 0.20 -0.9
2,285,160 - CA264_09830 0.20 -0.2
2,285,163 + CA264_09830 0.20 +0.5
2,285,267 + CA264_09830 0.23 -0.5
2,285,420 + CA264_09830 0.28 -0.3
2,285,478 + CA264_09830 0.30 -0.7
2,285,500 + CA264_09830 0.31 -0.1
2,285,501 - CA264_09830 0.31 -0.7
2,285,501 - CA264_09830 0.31 -1.3
2,285,673 + CA264_09830 0.36 -0.4
2,285,674 - CA264_09830 0.36 -0.6
2,285,677 + CA264_09830 0.36 -1.0
2,285,746 - CA264_09830 0.38 -0.1
2,285,811 + CA264_09830 0.40 -1.1
2,285,872 + CA264_09830 0.42 +0.4
2,285,893 + CA264_09830 0.43 +0.8
2,285,893 + CA264_09830 0.43 -0.1
2,285,894 - CA264_09830 0.43 -0.0
2,285,934 + CA264_09830 0.44 +0.7
2,285,935 - CA264_09830 0.44 -1.0
2,285,937 - CA264_09830 0.44 +0.5
2,285,957 + CA264_09830 0.45 +0.4
2,285,961 + CA264_09830 0.45 -0.4
2,286,150 + CA264_09830 0.51 -0.4
2,286,151 - CA264_09830 0.51 +0.3
2,286,239 - CA264_09830 0.54 -2.3
2,286,433 - CA264_09830 0.60 -0.1
2,286,433 - CA264_09830 0.60 -1.7
2,286,514 - CA264_09830 0.62 -1.2
2,286,564 + CA264_09830 0.64 -1.0
2,286,564 + CA264_09830 0.64 -0.7
2,286,565 - CA264_09830 0.64 +1.2
2,286,566 + CA264_09830 0.64 -0.3
2,286,566 + CA264_09830 0.64 -0.7
2,286,566 + CA264_09830 0.64 -1.3
2,286,567 - CA264_09830 0.64 -0.5
2,286,567 - CA264_09830 0.64 -0.6
2,286,628 + CA264_09830 0.66 +0.1
2,286,629 - CA264_09830 0.66 -0.3
2,286,738 + CA264_09830 0.70 +0.4
2,286,739 - CA264_09830 0.70 -0.8
2,286,739 - CA264_09830 0.70 -0.6
2,286,742 + CA264_09830 0.70 +0.5
2,286,742 + CA264_09830 0.70 -0.1
2,286,742 + CA264_09830 0.70 -0.3
2,286,742 + CA264_09830 0.70 +0.1
2,286,743 - CA264_09830 0.70 -1.1
2,286,793 + CA264_09830 0.71 -0.7
2,286,853 + CA264_09830 0.73 -0.9
2,286,926 - CA264_09830 0.75 +0.3
2,287,033 + CA264_09830 0.79 +0.1
2,287,042 + CA264_09830 0.79 -0.3
2,287,179 - CA264_09830 0.83 -0.3
2,287,210 + CA264_09830 0.84 -1.1
2,287,211 - CA264_09830 0.84 -0.4
2,287,211 - CA264_09830 0.84 -0.2
2,287,215 - CA264_09830 0.85 +0.7
2,287,238 + CA264_09830 0.85 -0.3
2,287,276 - CA264_09830 0.86 -0.2
2,287,298 + CA264_09830 0.87 +0.7
2,287,319 + CA264_09830 0.88 +0.8
2,287,319 + CA264_09830 0.88 -0.8
2,287,320 - CA264_09830 0.88 -0.4
2,287,320 - CA264_09830 0.88 -0.4
2,287,322 + +2.2
2,287,322 + CA264_09830 0.88 -0.3
2,287,323 - CA264_09830 0.88 -0.6
2,287,444 - -0.1
2,287,444 - +0.1
2,287,451 + +0.3
2,287,454 + -1.1
2,287,455 - -0.3
2,287,460 + -0.2
2,287,460 + -0.2
2,287,461 - -0.3
2,287,470 + +0.1
2,287,628 - +0.3
2,287,670 - -0.9
2,287,676 + -1.0
2,287,680 - -0.3
2,287,684 + -0.0
2,287,684 + -0.6
2,287,709 - +0.7
2,287,719 + -1.0
2,287,994 + -0.3
2,287,994 + +0.1
2,287,994 + -0.4
2,287,995 - -0.3
2,288,416 + +0.8
2,288,416 + +0.9
2,288,429 - -0.1
2,288,433 - +1.1
2,288,453 + -0.6
2,288,453 + -0.8
2,288,453 + +0.3
2,288,454 - -0.4
2,288,454 - -0.2
2,288,454 - -0.5
2,288,454 - +1.6
2,288,661 + -0.9
2,288,679 + -0.1

Or see this region's nucleotide sequence