Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08480

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08470 and CA264_08475 are separated by 27 nucleotidesCA264_08475 and CA264_08480 are separated by 165 nucleotidesCA264_08480 and CA264_08485 are separated by 269 nucleotides CA264_08470: CA264_08470 - glutamyl-tRNA reductase, at 1,966,041 to 1,967,387 _08470 CA264_08475: CA264_08475 - hypothetical protein, at 1,967,415 to 1,967,933 _08475 CA264_08480: CA264_08480 - murein transglycosylase, at 1,968,099 to 1,969,010 _08480 CA264_08485: CA264_08485 - hypothetical protein, at 1,969,280 to 1,972,540 _08485 Position (kb) 1968 1969 1970Strain fitness (log2 ratio) -2 -1 0 1at 1967.099 kb on - strand, within CA264_08470at 1967.108 kb on - strand, within CA264_08470at 1967.162 kb on - strand, within CA264_08470at 1967.162 kb on - strand, within CA264_08470at 1967.243 kb on - strand, within CA264_08470at 1967.295 kb on - strandat 1967.348 kb on - strandat 1967.371 kb on + strandat 1967.795 kb on + strand, within CA264_08475at 1967.796 kb on - strand, within CA264_08475at 1967.959 kb on + strandat 1967.960 kb on - strandat 1967.971 kb on - strandat 1967.998 kb on - strandat 1968.012 kb on + strandat 1968.012 kb on + strandat 1968.020 kb on - strandat 1968.020 kb on - strandat 1968.020 kb on - strandat 1968.101 kb on - strandat 1968.121 kb on + strandat 1968.149 kb on + strandat 1968.188 kb on + strandat 1968.189 kb on - strandat 1968.250 kb on - strand, within CA264_08480at 1968.304 kb on + strand, within CA264_08480at 1968.305 kb on - strand, within CA264_08480at 1968.355 kb on + strand, within CA264_08480at 1968.355 kb on + strand, within CA264_08480at 1968.379 kb on + strand, within CA264_08480at 1968.380 kb on - strand, within CA264_08480at 1968.389 kb on - strand, within CA264_08480at 1968.391 kb on + strand, within CA264_08480at 1968.392 kb on - strand, within CA264_08480at 1968.448 kb on + strand, within CA264_08480at 1968.449 kb on - strand, within CA264_08480at 1968.633 kb on - strand, within CA264_08480at 1968.667 kb on + strand, within CA264_08480at 1968.770 kb on - strand, within CA264_08480at 1968.963 kb on + strandat 1969.066 kb on - strandat 1969.071 kb on + strandat 1969.156 kb on + strandat 1969.157 kb on - strandat 1969.205 kb on + strandat 1969.215 kb on - strandat 1969.267 kb on - strandat 1969.282 kb on - strandat 1969.497 kb on - strandat 1969.531 kb on - strandat 1969.541 kb on - strandat 1969.541 kb on - strandat 1969.585 kb on + strandat 1969.586 kb on - strandat 1969.586 kb on - strandat 1969.830 kb on - strand, within CA264_08485at 1969.993 kb on + strand, within CA264_08485at 1969.999 kb on + strand, within CA264_08485

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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1,967,099 - CA264_08470 0.79 -0.2
1,967,108 - CA264_08470 0.79 -1.0
1,967,162 - CA264_08470 0.83 +0.5
1,967,162 - CA264_08470 0.83 -0.4
1,967,243 - CA264_08470 0.89 -0.5
1,967,295 - -0.8
1,967,348 - +0.3
1,967,371 + -1.2
1,967,795 + CA264_08475 0.73 -0.5
1,967,796 - CA264_08475 0.73 +0.5
1,967,959 + +0.7
1,967,960 - +1.1
1,967,971 - +0.2
1,967,998 - +1.2
1,968,012 + -0.5
1,968,012 + +0.2
1,968,020 - -0.1
1,968,020 - -0.1
1,968,020 - -0.6
1,968,101 - -0.1
1,968,121 + -0.6
1,968,149 + -0.4
1,968,188 + +0.8
1,968,189 - -0.4
1,968,250 - CA264_08480 0.17 -0.3
1,968,304 + CA264_08480 0.22 +0.1
1,968,305 - CA264_08480 0.23 -0.1
1,968,355 + CA264_08480 0.28 +1.1
1,968,355 + CA264_08480 0.28 +0.5
1,968,379 + CA264_08480 0.31 +0.1
1,968,380 - CA264_08480 0.31 -0.7
1,968,389 - CA264_08480 0.32 +0.8
1,968,391 + CA264_08480 0.32 -1.1
1,968,392 - CA264_08480 0.32 +0.1
1,968,448 + CA264_08480 0.38 +0.5
1,968,449 - CA264_08480 0.38 -0.7
1,968,633 - CA264_08480 0.59 +0.2
1,968,667 + CA264_08480 0.62 +1.2
1,968,770 - CA264_08480 0.74 -0.2
1,968,963 + -0.0
1,969,066 - +0.2
1,969,071 + +0.1
1,969,156 + +0.1
1,969,157 - -0.9
1,969,205 + -2.0
1,969,215 - +0.1
1,969,267 - -0.9
1,969,282 - -0.2
1,969,497 - +0.0
1,969,531 - -0.2
1,969,541 - +1.2
1,969,541 - -0.0
1,969,585 + -0.1
1,969,586 - +0.5
1,969,586 - -0.4
1,969,830 - CA264_08485 0.17 -0.4
1,969,993 + CA264_08485 0.22 +0.1
1,969,999 + CA264_08485 0.22 -0.5

Or see this region's nucleotide sequence