Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07120 and CA264_07125 are separated by 152 nucleotides CA264_07125 and CA264_07130 are separated by 237 nucleotides
CA264_07120: CA264_07120 - citrate (Si)-synthase, at 1,641,138 to 1,642,424
_07120
CA264_07125: CA264_07125 - 6-carboxytetrahydropterin synthase QueD, at 1,642,577 to 1,643,026
_07125
CA264_07130: CA264_07130 - hypothetical protein, at 1,643,264 to 1,645,189
_07130
Position (kb)
1642
1643
1644 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1642.402 kb on - strand at 1642.402 kb on - strand at 1642.409 kb on + strand at 1642.410 kb on - strand at 1642.435 kb on + strand at 1642.436 kb on - strand at 1642.438 kb on - strand at 1642.563 kb on + strand at 1642.564 kb on - strand at 1642.564 kb on - strand at 1642.570 kb on - strand at 1642.606 kb on + strand at 1642.637 kb on + strand, within CA264_07125 at 1642.638 kb on - strand, within CA264_07125 at 1642.638 kb on - strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.673 kb on + strand, within CA264_07125 at 1642.687 kb on - strand, within CA264_07125 at 1642.758 kb on + strand, within CA264_07125 at 1642.785 kb on + strand, within CA264_07125 at 1642.785 kb on + strand, within CA264_07125 at 1642.883 kb on + strand, within CA264_07125 at 1642.953 kb on + strand, within CA264_07125 at 1642.954 kb on - strand, within CA264_07125 at 1642.954 kb on - strand, within CA264_07125 at 1642.968 kb on + strand, within CA264_07125 at 1643.007 kb on - strand at 1643.069 kb on + strand at 1643.085 kb on + strand at 1643.086 kb on - strand at 1643.092 kb on - strand at 1643.152 kb on - strand at 1643.156 kb on + strand at 1643.157 kb on - strand at 1643.188 kb on + strand at 1643.188 kb on + strand at 1643.188 kb on + strand at 1643.189 kb on - strand at 1643.189 kb on - strand at 1643.189 kb on - strand at 1643.197 kb on + strand at 1643.221 kb on - strand at 1643.231 kb on - strand at 1643.236 kb on + strand at 1643.265 kb on + strand at 1643.266 kb on - strand at 1643.266 kb on - strand at 1643.346 kb on + strand at 1643.347 kb on - strand at 1643.380 kb on + strand at 1643.381 kb on - strand at 1643.394 kb on + strand at 1643.506 kb on + strand, within CA264_07130 at 1643.506 kb on + strand, within CA264_07130 at 1643.554 kb on + strand, within CA264_07130 at 1643.555 kb on - strand, within CA264_07130 at 1643.556 kb on + strand, within CA264_07130 at 1643.622 kb on + strand, within CA264_07130 at 1643.623 kb on - strand, within CA264_07130 at 1643.663 kb on - strand, within CA264_07130 at 1643.710 kb on - strand, within CA264_07130 at 1643.719 kb on - strand, within CA264_07130 at 1643.749 kb on - strand, within CA264_07130 at 1643.749 kb on - strand, within CA264_07130 at 1643.808 kb on + strand, within CA264_07130 at 1643.808 kb on + strand, within CA264_07130 at 1643.871 kb on + strand, within CA264_07130 at 1643.872 kb on - strand, within CA264_07130 at 1643.875 kb on + strand, within CA264_07130 at 1643.875 kb on + strand, within CA264_07130 at 1643.876 kb on - strand, within CA264_07130 at 1643.919 kb on + strand, within CA264_07130 at 1643.919 kb on + strand, within CA264_07130 at 1643.920 kb on - strand, within CA264_07130 at 1643.927 kb on + strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.928 kb on - strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.929 kb on + strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.930 kb on - strand, within CA264_07130 at 1643.967 kb on + strand, within CA264_07130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 1,642,402 - +0.7 1,642,402 - +0.2 1,642,409 + -0.0 1,642,410 - -1.9 1,642,435 + -0.3 1,642,436 - +0.1 1,642,438 - -0.6 1,642,563 + +1.4 1,642,564 - -0.0 1,642,564 - +1.0 1,642,570 - -1.4 1,642,606 + -0.4 1,642,637 + CA264_07125 0.13 -0.8 1,642,638 - CA264_07125 0.14 +1.0 1,642,638 - CA264_07125 0.14 -0.5 1,642,673 + CA264_07125 0.21 +0.2 1,642,673 + CA264_07125 0.21 +2.1 1,642,673 + CA264_07125 0.21 +0.2 1,642,687 - CA264_07125 0.24 -1.2 1,642,758 + CA264_07125 0.40 +0.9 1,642,785 + CA264_07125 0.46 -0.1 1,642,785 + CA264_07125 0.46 -0.1 1,642,883 + CA264_07125 0.68 +0.1 1,642,953 + CA264_07125 0.84 +0.3 1,642,954 - CA264_07125 0.84 -0.4 1,642,954 - CA264_07125 0.84 -0.1 1,642,968 + CA264_07125 0.87 -0.2 1,643,007 - -0.0 1,643,069 + -0.3 1,643,085 + +0.5 1,643,086 - -0.0 1,643,092 - -0.3 1,643,152 - +1.1 1,643,156 + +0.5 1,643,157 - -0.5 1,643,188 + +1.2 1,643,188 + -0.4 1,643,188 + -0.4 1,643,189 - -0.6 1,643,189 - -0.5 1,643,189 - -0.1 1,643,197 + +0.3 1,643,221 - +0.1 1,643,231 - -0.8 1,643,236 + -0.4 1,643,265 + -0.4 1,643,266 - -0.5 1,643,266 - +0.8 1,643,346 + -2.1 1,643,347 - -0.4 1,643,380 + -0.2 1,643,381 - -0.3 1,643,394 + +0.8 1,643,506 + CA264_07130 0.13 +0.1 1,643,506 + CA264_07130 0.13 -0.3 1,643,554 + CA264_07130 0.15 -0.4 1,643,555 - CA264_07130 0.15 -0.4 1,643,556 + CA264_07130 0.15 -0.0 1,643,622 + CA264_07130 0.19 -0.7 1,643,623 - CA264_07130 0.19 -0.0 1,643,663 - CA264_07130 0.21 -1.1 1,643,710 - CA264_07130 0.23 +0.1 1,643,719 - CA264_07130 0.24 -0.8 1,643,749 - CA264_07130 0.25 +0.9 1,643,749 - CA264_07130 0.25 +1.6 1,643,808 + CA264_07130 0.28 +0.2 1,643,808 + CA264_07130 0.28 +0.5 1,643,871 + CA264_07130 0.32 +0.8 1,643,872 - CA264_07130 0.32 -0.3 1,643,875 + CA264_07130 0.32 -0.6 1,643,875 + CA264_07130 0.32 +0.6 1,643,876 - CA264_07130 0.32 -0.1 1,643,919 + CA264_07130 0.34 +0.1 1,643,919 + CA264_07130 0.34 +0.6 1,643,920 - CA264_07130 0.34 -0.2 1,643,927 + CA264_07130 0.34 +0.7 1,643,928 - CA264_07130 0.34 -0.1 1,643,928 - CA264_07130 0.34 +1.5 1,643,928 - CA264_07130 0.34 +0.3 1,643,929 + CA264_07130 0.35 +0.4 1,643,929 + CA264_07130 0.35 +2.8 1,643,929 + CA264_07130 0.35 -0.2 1,643,929 + CA264_07130 0.35 +0.4 1,643,930 - CA264_07130 0.35 -1.5 1,643,930 - CA264_07130 0.35 -0.7 1,643,930 - CA264_07130 0.35 +0.8 1,643,967 + CA264_07130 0.37 -0.7
Or see this region's nucleotide sequence