Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05280
Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Vancomycin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,224,452 | - | CA264_05275 | 0.86 | -1.5 | |
1,224,526 | - | -1.1 | |||
1,224,822 | + | -0.4 | |||
1,224,896 | - | CA264_05280 | 0.13 | -1.3 | |
1,224,945 | + | CA264_05280 | 0.21 | -0.3 | |
1,224,945 | + | CA264_05280 | 0.21 | -0.9 | |
1,224,947 | + | CA264_05280 | 0.21 | -0.8 | |
1,224,948 | - | CA264_05280 | 0.21 | -0.7 | |
1,225,049 | + | CA264_05280 | 0.38 | -0.2 | |
1,225,182 | + | CA264_05280 | 0.60 | -0.9 | |
1,225,184 | + | CA264_05280 | 0.61 | +0.9 | |
1,225,184 | + | CA264_05280 | 0.61 | +1.2 | |
1,225,184 | + | CA264_05280 | 0.61 | +0.6 | |
1,225,188 | + | CA264_05280 | 0.61 | +0.4 | |
1,225,189 | - | CA264_05280 | 0.61 | -1.3 | |
1,225,209 | + | CA264_05280 | 0.65 | -1.4 | |
1,225,211 | + | CA264_05280 | 0.65 | +0.6 | |
1,225,211 | + | CA264_05280 | 0.65 | -0.5 | |
1,225,212 | - | CA264_05280 | 0.65 | -0.2 | |
1,225,216 | + | CA264_05280 | 0.66 | +0.1 | |
1,225,216 | + | CA264_05280 | 0.66 | -0.2 | |
1,225,217 | - | CA264_05280 | 0.66 | -0.1 | |
1,225,400 | - | -0.1 | |||
1,225,400 | - | -0.5 | |||
1,225,425 | + | +0.1 | |||
1,225,426 | - | +0.3 | |||
1,225,430 | + | +0.5 | |||
1,225,431 | - | +0.5 | |||
1,225,462 | + | -0.9 | |||
1,225,463 | - | +0.3 | |||
1,225,501 | + | -0.8 | |||
1,225,502 | - | +0.1 | |||
1,225,502 | - | -0.4 | |||
1,225,539 | - | +0.1 |
Or see this region's nucleotide sequence