Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04805

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04795 and CA264_04800 are separated by 6 nucleotidesCA264_04800 and CA264_04805 are separated by 90 nucleotidesCA264_04805 and CA264_04810 are separated by 31 nucleotides CA264_04795: CA264_04795 - hypothetical protein, at 1,109,800 to 1,110,294 _04795 CA264_04800: CA264_04800 - hypothetical protein, at 1,110,301 to 1,110,903 _04800 CA264_04805: CA264_04805 - membrane protein insertase YidC, at 1,110,994 to 1,112,823 _04805 CA264_04810: CA264_04810 - CTP synthetase, at 1,112,855 to 1,114,468 _04810 Position (kb) 1110 1111 1112 1113Strain fitness (log2 ratio) -3 -2 -1 0 1at 1110.028 kb on + strand, within CA264_04795at 1110.029 kb on - strand, within CA264_04795at 1110.029 kb on - strand, within CA264_04795at 1110.092 kb on + strand, within CA264_04795at 1110.114 kb on - strand, within CA264_04795at 1110.128 kb on + strand, within CA264_04795at 1110.129 kb on - strand, within CA264_04795at 1110.146 kb on + strand, within CA264_04795at 1110.263 kb on - strandat 1110.263 kb on - strandat 1110.263 kb on - strandat 1110.281 kb on - strandat 1110.307 kb on - strandat 1110.307 kb on - strandat 1110.307 kb on - strandat 1110.350 kb on + strandat 1110.351 kb on - strandat 1110.351 kb on - strandat 1110.409 kb on + strand, within CA264_04800at 1110.410 kb on - strand, within CA264_04800at 1110.437 kb on + strand, within CA264_04800at 1110.438 kb on - strand, within CA264_04800at 1110.544 kb on - strand, within CA264_04800at 1110.600 kb on - strand, within CA264_04800at 1110.654 kb on - strand, within CA264_04800at 1110.654 kb on - strand, within CA264_04800at 1110.689 kb on + strand, within CA264_04800at 1110.689 kb on + strand, within CA264_04800at 1110.869 kb on + strandat 1110.877 kb on + strandat 1110.878 kb on - strandat 1110.903 kb on + strandat 1110.903 kb on + strandat 1110.903 kb on + strandat 1110.904 kb on - strandat 1110.907 kb on + strandat 1110.907 kb on + strandat 1110.907 kb on + strandat 1110.908 kb on - strandat 1110.908 kb on - strandat 1110.908 kb on - strandat 1110.915 kb on - strandat 1110.915 kb on - strandat 1110.937 kb on + strandat 1111.133 kb on - strandat 1112.848 kb on - strandat 1112.857 kb on - strandat 1112.867 kb on - strandat 1112.867 kb on - strandat 1112.875 kb on + strandat 1112.876 kb on - strandat 1112.876 kb on - strandat 1112.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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1,110,028 + CA264_04795 0.46 -1.0
1,110,029 - CA264_04795 0.46 +0.7
1,110,029 - CA264_04795 0.46 +0.1
1,110,092 + CA264_04795 0.59 -0.6
1,110,114 - CA264_04795 0.63 +0.4
1,110,128 + CA264_04795 0.66 -1.3
1,110,129 - CA264_04795 0.66 -0.1
1,110,146 + CA264_04795 0.70 -3.1
1,110,263 - +0.1
1,110,263 - +0.6
1,110,263 - -0.3
1,110,281 - -0.2
1,110,307 - -0.4
1,110,307 - -0.5
1,110,307 - +0.2
1,110,350 + +0.7
1,110,351 - -0.3
1,110,351 - -0.1
1,110,409 + CA264_04800 0.18 -0.3
1,110,410 - CA264_04800 0.18 -0.5
1,110,437 + CA264_04800 0.23 -1.1
1,110,438 - CA264_04800 0.23 +0.6
1,110,544 - CA264_04800 0.40 -0.7
1,110,600 - CA264_04800 0.50 -0.4
1,110,654 - CA264_04800 0.59 -0.3
1,110,654 - CA264_04800 0.59 +1.6
1,110,689 + CA264_04800 0.64 -1.0
1,110,689 + CA264_04800 0.64 -2.2
1,110,869 + -0.9
1,110,877 + +0.2
1,110,878 - -0.6
1,110,903 + -1.7
1,110,903 + -0.6
1,110,903 + -1.3
1,110,904 - -0.0
1,110,907 + -0.5
1,110,907 + -1.1
1,110,907 + -1.3
1,110,908 - +0.5
1,110,908 - -0.4
1,110,908 - -1.2
1,110,915 - +0.1
1,110,915 - +0.4
1,110,937 + -1.4
1,111,133 - -0.6
1,112,848 - -1.0
1,112,857 - -0.4
1,112,867 - -2.2
1,112,867 - +0.0
1,112,875 + -1.6
1,112,876 - -0.3
1,112,876 - -0.4
1,112,876 - -0.4

Or see this region's nucleotide sequence