Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01055 and CA264_01060 are separated by 269 nucleotides CA264_01060 and CA264_01065 are separated by 153 nucleotides CA264_01065 and CA264_01070 are separated by 39 nucleotides
CA264_01055: CA264_01055 - dicarboxylate/amino acid:cation symporter, at 232,004 to 233,440
_01055
CA264_01060: CA264_01060 - hypothetical protein, at 233,710 to 234,744
_01060
CA264_01065: CA264_01065 - MarR family transcriptional regulator, at 234,898 to 235,347
_01065
CA264_01070: CA264_01070 - lipid-binding protein, at 235,387 to 236,046
_01070
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 232.982 kb on + strand, within CA264_01055 at 233.024 kb on + strand, within CA264_01055 at 233.058 kb on + strand, within CA264_01055 at 233.162 kb on - strand, within CA264_01055 at 233.162 kb on - strand, within CA264_01055 at 233.292 kb on + strand, within CA264_01055 at 233.356 kb on + strand at 233.365 kb on - strand at 233.381 kb on - strand at 233.441 kb on - strand at 233.560 kb on - strand at 233.560 kb on - strand at 233.572 kb on - strand at 233.573 kb on + strand at 233.574 kb on - strand at 233.614 kb on - strand at 233.652 kb on + strand at 233.652 kb on + strand at 233.653 kb on - strand at 233.696 kb on - strand at 233.752 kb on + strand at 233.772 kb on - strand at 233.865 kb on + strand, within CA264_01060 at 233.866 kb on - strand, within CA264_01060 at 233.870 kb on - strand, within CA264_01060 at 233.870 kb on - strand, within CA264_01060 at 233.938 kb on + strand, within CA264_01060 at 233.938 kb on + strand, within CA264_01060 at 234.052 kb on + strand, within CA264_01060 at 234.052 kb on + strand, within CA264_01060 at 234.062 kb on - strand, within CA264_01060 at 234.209 kb on - strand, within CA264_01060 at 234.219 kb on - strand, within CA264_01060 at 234.251 kb on + strand, within CA264_01060 at 234.274 kb on - strand, within CA264_01060 at 234.343 kb on - strand, within CA264_01060 at 234.513 kb on + strand, within CA264_01060 at 234.514 kb on - strand, within CA264_01060 at 234.514 kb on - strand, within CA264_01060 at 234.539 kb on + strand, within CA264_01060 at 234.549 kb on - strand, within CA264_01060 at 234.733 kb on + strand at 234.743 kb on - strand at 234.783 kb on + strand at 234.906 kb on - strand at 234.955 kb on + strand, within CA264_01065 at 234.972 kb on + strand, within CA264_01065 at 235.039 kb on + strand, within CA264_01065 at 235.054 kb on - strand, within CA264_01065 at 235.356 kb on + strand at 235.356 kb on + strand at 235.359 kb on - strand at 235.359 kb on - strand at 235.374 kb on + strand at 235.380 kb on - strand at 235.380 kb on - strand at 235.442 kb on - strand at 235.482 kb on + strand, within CA264_01070 at 235.482 kb on + strand, within CA264_01070 at 235.482 kb on + strand, within CA264_01070 at 235.483 kb on - strand, within CA264_01070 at 235.516 kb on + strand, within CA264_01070 at 235.516 kb on + strand, within CA264_01070 at 235.519 kb on - strand, within CA264_01070 at 235.523 kb on + strand, within CA264_01070 at 235.524 kb on - strand, within CA264_01070 at 235.697 kb on - strand, within CA264_01070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 232,982 + CA264_01055 0.68 -1.3 233,024 + CA264_01055 0.71 -1.5 233,058 + CA264_01055 0.73 -0.0 233,162 - CA264_01055 0.81 -0.0 233,162 - CA264_01055 0.81 -0.9 233,292 + CA264_01055 0.90 -0.9 233,356 + -0.5 233,365 - -0.6 233,381 - -0.3 233,441 - -0.5 233,560 - -0.0 233,560 - -0.3 233,572 - +0.3 233,573 + -0.6 233,574 - -0.7 233,614 - -0.6 233,652 + -0.3 233,652 + -1.1 233,653 - -0.7 233,696 - -0.8 233,752 + -1.5 233,772 - -0.7 233,865 + CA264_01060 0.15 -1.1 233,866 - CA264_01060 0.15 -0.8 233,870 - CA264_01060 0.15 -0.5 233,870 - CA264_01060 0.15 -1.7 233,938 + CA264_01060 0.22 -2.2 233,938 + CA264_01060 0.22 -1.8 234,052 + CA264_01060 0.33 -2.1 234,052 + CA264_01060 0.33 -1.3 234,062 - CA264_01060 0.34 -0.5 234,209 - CA264_01060 0.48 +0.8 234,219 - CA264_01060 0.49 -0.9 234,251 + CA264_01060 0.52 -2.6 234,274 - CA264_01060 0.54 -0.8 234,343 - CA264_01060 0.61 -0.5 234,513 + CA264_01060 0.78 -1.2 234,514 - CA264_01060 0.78 -0.4 234,514 - CA264_01060 0.78 -0.6 234,539 + CA264_01060 0.80 -1.3 234,549 - CA264_01060 0.81 -0.8 234,733 + -1.0 234,743 - -1.6 234,783 + -1.0 234,906 - -0.5 234,955 + CA264_01065 0.13 -2.0 234,972 + CA264_01065 0.16 -0.3 235,039 + CA264_01065 0.31 -2.0 235,054 - CA264_01065 0.35 -0.7 235,356 + -2.0 235,356 + +3.1 235,359 - +0.1 235,359 - +0.6 235,374 + -1.6 235,380 - -0.4 235,380 - -0.1 235,442 - -0.0 235,482 + CA264_01070 0.14 -1.2 235,482 + CA264_01070 0.14 +0.2 235,482 + CA264_01070 0.14 -0.6 235,483 - CA264_01070 0.15 +0.7 235,516 + CA264_01070 0.20 -0.7 235,516 + CA264_01070 0.20 -0.2 235,519 - CA264_01070 0.20 +0.1 235,523 + CA264_01070 0.21 -0.5 235,524 - CA264_01070 0.21 -1.5 235,697 - CA264_01070 0.47 +0.0
Or see this region's nucleotide sequence