Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00965

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00960 and CA264_00965 are separated by 466 nucleotidesCA264_00965 and CA264_00970 are separated by 18 nucleotides CA264_00960: CA264_00960 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase, at 206,263 to 207,663 _00960 CA264_00965: CA264_00965 - sugar transporter, at 208,130 to 208,921 _00965 CA264_00970: CA264_00970 - capsular biosynthesis protein, at 208,940 to 211,264 _00970 Position (kb) 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 207.194 kb on - strand, within CA264_00960at 207.194 kb on - strand, within CA264_00960at 207.194 kb on - strand, within CA264_00960at 207.238 kb on + strand, within CA264_00960at 207.240 kb on + strand, within CA264_00960at 207.240 kb on + strand, within CA264_00960at 207.240 kb on + strand, within CA264_00960at 207.475 kb on + strand, within CA264_00960at 207.476 kb on - strand, within CA264_00960at 207.476 kb on - strand, within CA264_00960at 207.581 kb on + strandat 207.582 kb on - strandat 207.617 kb on + strandat 207.618 kb on - strandat 207.618 kb on - strandat 207.619 kb on + strandat 207.619 kb on + strandat 207.620 kb on - strandat 207.665 kb on + strandat 207.665 kb on + strandat 207.666 kb on - strandat 207.669 kb on + strandat 207.670 kb on - strandat 207.682 kb on + strandat 207.688 kb on + strandat 207.689 kb on - strandat 207.741 kb on - strandat 207.744 kb on - strandat 207.943 kb on - strandat 208.214 kb on + strand, within CA264_00965at 208.214 kb on + strand, within CA264_00965at 208.215 kb on - strand, within CA264_00965at 208.219 kb on + strand, within CA264_00965at 208.220 kb on - strand, within CA264_00965at 208.276 kb on - strand, within CA264_00965at 208.293 kb on + strand, within CA264_00965at 208.413 kb on - strand, within CA264_00965at 208.413 kb on - strand, within CA264_00965at 208.433 kb on + strand, within CA264_00965at 208.438 kb on - strand, within CA264_00965at 208.515 kb on + strand, within CA264_00965at 208.515 kb on + strand, within CA264_00965at 208.544 kb on - strand, within CA264_00965at 208.544 kb on - strand, within CA264_00965at 208.544 kb on - strand, within CA264_00965at 208.569 kb on - strand, within CA264_00965at 208.584 kb on + strand, within CA264_00965at 208.585 kb on - strand, within CA264_00965at 208.641 kb on + strand, within CA264_00965at 208.669 kb on + strand, within CA264_00965at 208.669 kb on + strand, within CA264_00965at 208.669 kb on + strand, within CA264_00965at 208.676 kb on + strand, within CA264_00965at 208.775 kb on + strand, within CA264_00965at 208.775 kb on + strand, within CA264_00965at 208.779 kb on - strand, within CA264_00965at 208.786 kb on - strand, within CA264_00965at 208.786 kb on - strand, within CA264_00965at 208.805 kb on + strand, within CA264_00965at 208.805 kb on + strand, within CA264_00965at 208.805 kb on + strand, within CA264_00965at 208.831 kb on - strand, within CA264_00965at 208.831 kb on - strand, within CA264_00965at 208.870 kb on - strandat 208.881 kb on + strandat 208.882 kb on - strandat 208.887 kb on + strandat 208.887 kb on + strandat 208.888 kb on - strandat 208.888 kb on - strandat 208.888 kb on - strandat 208.888 kb on - strandat 208.897 kb on - strandat 208.920 kb on - strandat 208.920 kb on - strandat 208.923 kb on - strandat 208.940 kb on - strandat 208.952 kb on - strandat 208.957 kb on + strandat 208.958 kb on - strandat 208.958 kb on - strandat 208.958 kb on - strandat 208.991 kb on + strandat 208.992 kb on - strandat 208.997 kb on + strandat 208.997 kb on + strandat 209.060 kb on + strandat 209.061 kb on - strandat 209.061 kb on - strandat 209.073 kb on + strandat 209.073 kb on + strandat 209.087 kb on + strandat 209.095 kb on - strandat 209.188 kb on - strand, within CA264_00970at 209.300 kb on + strand, within CA264_00970at 209.330 kb on - strand, within CA264_00970at 209.364 kb on + strand, within CA264_00970at 209.365 kb on - strand, within CA264_00970at 209.371 kb on + strand, within CA264_00970at 209.371 kb on + strand, within CA264_00970at 209.372 kb on - strand, within CA264_00970at 209.376 kb on - strand, within CA264_00970at 209.376 kb on - strand, within CA264_00970at 209.376 kb on - strand, within CA264_00970at 209.428 kb on + strand, within CA264_00970at 209.428 kb on + strand, within CA264_00970at 209.429 kb on - strand, within CA264_00970at 209.447 kb on + strand, within CA264_00970at 209.486 kb on - strand, within CA264_00970at 209.517 kb on + strand, within CA264_00970at 209.565 kb on + strand, within CA264_00970at 209.743 kb on - strand, within CA264_00970at 209.743 kb on - strand, within CA264_00970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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207,194 - CA264_00960 0.66 +0.4
207,194 - CA264_00960 0.66 +0.2
207,194 - CA264_00960 0.66 -0.6
207,238 + CA264_00960 0.70 -0.3
207,240 + CA264_00960 0.70 -0.0
207,240 + CA264_00960 0.70 +0.1
207,240 + CA264_00960 0.70 -1.1
207,475 + CA264_00960 0.87 -0.7
207,476 - CA264_00960 0.87 -0.3
207,476 - CA264_00960 0.87 -0.5
207,581 + +0.1
207,582 - +0.9
207,617 + -1.3
207,618 - -0.8
207,618 - -0.2
207,619 + -0.3
207,619 + +0.3
207,620 - +0.5
207,665 + -0.5
207,665 + -0.3
207,666 - -0.8
207,669 + +0.7
207,670 - -0.4
207,682 + -0.6
207,688 + +0.4
207,689 - -1.0
207,741 - -0.8
207,744 - +0.4
207,943 - +0.9
208,214 + CA264_00965 0.11 +0.3
208,214 + CA264_00965 0.11 +0.4
208,215 - CA264_00965 0.11 +1.1
208,219 + CA264_00965 0.11 -0.4
208,220 - CA264_00965 0.11 -1.1
208,276 - CA264_00965 0.18 -1.4
208,293 + CA264_00965 0.21 -0.7
208,413 - CA264_00965 0.36 -0.2
208,413 - CA264_00965 0.36 -1.0
208,433 + CA264_00965 0.38 -0.7
208,438 - CA264_00965 0.39 +0.5
208,515 + CA264_00965 0.49 +0.2
208,515 + CA264_00965 0.49 -0.9
208,544 - CA264_00965 0.52 -1.1
208,544 - CA264_00965 0.52 -0.3
208,544 - CA264_00965 0.52 -0.0
208,569 - CA264_00965 0.55 -0.5
208,584 + CA264_00965 0.57 -1.3
208,585 - CA264_00965 0.57 -0.5
208,641 + CA264_00965 0.65 -1.2
208,669 + CA264_00965 0.68 -1.8
208,669 + CA264_00965 0.68 -0.5
208,669 + CA264_00965 0.68 -1.0
208,676 + CA264_00965 0.69 +0.1
208,775 + CA264_00965 0.81 -0.3
208,775 + CA264_00965 0.81 -0.1
208,779 - CA264_00965 0.82 -0.5
208,786 - CA264_00965 0.83 +0.2
208,786 - CA264_00965 0.83 -0.4
208,805 + CA264_00965 0.85 -0.7
208,805 + CA264_00965 0.85 +0.1
208,805 + CA264_00965 0.85 -0.3
208,831 - CA264_00965 0.89 +0.1
208,831 - CA264_00965 0.89 +0.4
208,870 - +1.2
208,881 + -1.8
208,882 - +0.0
208,887 + -0.7
208,887 + +0.4
208,888 - -0.2
208,888 - +0.1
208,888 - -0.1
208,888 - +0.3
208,897 - +0.1
208,920 - +0.2
208,920 - +0.4
208,923 - +0.1
208,940 - +0.8
208,952 - -0.3
208,957 + +0.8
208,958 - -0.6
208,958 - +0.7
208,958 - -1.6
208,991 + -0.3
208,992 - -0.1
208,997 + -0.3
208,997 + -0.1
209,060 + -0.6
209,061 - +2.4
209,061 - +0.1
209,073 + -0.2
209,073 + -1.1
209,087 + +0.3
209,095 - -0.3
209,188 - CA264_00970 0.11 +0.2
209,300 + CA264_00970 0.15 +0.4
209,330 - CA264_00970 0.17 +1.1
209,364 + CA264_00970 0.18 +0.9
209,365 - CA264_00970 0.18 -0.0
209,371 + CA264_00970 0.19 -0.2
209,371 + CA264_00970 0.19 -0.0
209,372 - CA264_00970 0.19 +1.4
209,376 - CA264_00970 0.19 +0.5
209,376 - CA264_00970 0.19 +0.5
209,376 - CA264_00970 0.19 -0.2
209,428 + CA264_00970 0.21 -0.3
209,428 + CA264_00970 0.21 +0.2
209,429 - CA264_00970 0.21 +0.0
209,447 + CA264_00970 0.22 -0.2
209,486 - CA264_00970 0.23 -0.4
209,517 + CA264_00970 0.25 +0.2
209,565 + CA264_00970 0.27 -0.1
209,743 - CA264_00970 0.35 -0.6
209,743 - CA264_00970 0.35 -0.7

Or see this region's nucleotide sequence