Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00920

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00915 and CA264_00920 are separated by 46 nucleotidesCA264_00920 and CA264_00925 are separated by 212 nucleotides CA264_00915: CA264_00915 - hypothetical protein, at 195,807 to 197,114 _00915 CA264_00920: CA264_00920 - acetyltransferase, at 197,161 to 197,796 _00920 CA264_00925: CA264_00925 - hypothetical protein, at 198,009 to 198,977 _00925 Position (kb) 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 196.170 kb on - strand, within CA264_00915at 196.191 kb on + strand, within CA264_00915at 196.210 kb on - strand, within CA264_00915at 196.280 kb on + strand, within CA264_00915at 196.344 kb on - strand, within CA264_00915at 196.459 kb on - strand, within CA264_00915at 196.486 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.755 kb on - strand, within CA264_00915at 196.768 kb on - strand, within CA264_00915at 196.783 kb on + strand, within CA264_00915at 196.783 kb on + strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.831 kb on - strand, within CA264_00915at 196.831 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.940 kb on + strand, within CA264_00915at 196.940 kb on + strand, within CA264_00915at 196.941 kb on - strand, within CA264_00915at 196.974 kb on - strand, within CA264_00915at 197.041 kb on + strandat 197.150 kb on - strandat 197.180 kb on + strandat 197.180 kb on + strandat 197.181 kb on - strandat 197.181 kb on - strandat 197.183 kb on + strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.214 kb on - strandat 197.218 kb on - strandat 197.218 kb on - strandat 197.218 kb on - strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.220 kb on - strandat 197.429 kb on + strand, within CA264_00920at 197.429 kb on + strand, within CA264_00920at 197.599 kb on + strand, within CA264_00920at 197.640 kb on + strand, within CA264_00920at 197.640 kb on + strand, within CA264_00920at 197.908 kb on + strandat 197.908 kb on + strandat 197.909 kb on - strandat 197.975 kb on - strandat 197.978 kb on + strandat 197.990 kb on - strandat 198.008 kb on + strandat 198.009 kb on - strandat 198.028 kb on + strandat 198.029 kb on - strandat 198.029 kb on - strandat 198.036 kb on + strandat 198.039 kb on + strandat 198.040 kb on - strandat 198.040 kb on - strandat 198.264 kb on - strand, within CA264_00925at 198.365 kb on + strand, within CA264_00925at 198.397 kb on + strand, within CA264_00925at 198.513 kb on + strand, within CA264_00925at 198.514 kb on - strand, within CA264_00925at 198.515 kb on + strand, within CA264_00925at 198.606 kb on + strand, within CA264_00925at 198.606 kb on + strand, within CA264_00925at 198.634 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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196,170 - CA264_00915 0.28 -0.1
196,191 + CA264_00915 0.29 +0.1
196,210 - CA264_00915 0.31 -0.1
196,280 + CA264_00915 0.36 -0.1
196,344 - CA264_00915 0.41 -1.1
196,459 - CA264_00915 0.50 -2.0
196,486 - CA264_00915 0.52 +0.0
196,519 - CA264_00915 0.54 +0.0
196,519 - CA264_00915 0.54 -0.0
196,519 - CA264_00915 0.54 +0.8
196,755 - CA264_00915 0.72 -0.7
196,768 - CA264_00915 0.73 -0.7
196,783 + CA264_00915 0.75 +0.9
196,783 + CA264_00915 0.75 +0.1
196,784 - CA264_00915 0.75 -1.0
196,784 - CA264_00915 0.75 +0.1
196,784 - CA264_00915 0.75 -0.2
196,784 - CA264_00915 0.75 +0.9
196,831 - CA264_00915 0.78 +0.2
196,831 - CA264_00915 0.78 +0.7
196,937 - CA264_00915 0.86 -0.0
196,937 - CA264_00915 0.86 +0.7
196,937 - CA264_00915 0.86 -0.0
196,937 - CA264_00915 0.86 -0.7
196,940 + CA264_00915 0.87 +0.4
196,940 + CA264_00915 0.87 +0.2
196,941 - CA264_00915 0.87 -0.5
196,974 - CA264_00915 0.89 -0.9
197,041 + +0.0
197,150 - +0.6
197,180 + +0.5
197,180 + +0.4
197,181 - +0.1
197,181 - +0.3
197,183 + +1.0
197,184 - +0.0
197,184 - -0.1
197,184 - -0.4
197,184 - +0.0
197,184 - -0.4
197,213 + +0.6
197,213 + +0.1
197,213 + +1.4
197,213 + +0.6
197,213 + +1.0
197,214 - +0.4
197,218 - -0.6
197,218 - -0.1
197,218 - +1.0
197,219 + +0.3
197,219 + -0.1
197,220 - -1.3
197,429 + CA264_00920 0.42 +0.0
197,429 + CA264_00920 0.42 +0.2
197,599 + CA264_00920 0.69 +0.3
197,640 + CA264_00920 0.75 -0.4
197,640 + CA264_00920 0.75 +1.8
197,908 + -0.0
197,908 + +0.4
197,909 - +0.2
197,975 - +1.2
197,978 + -0.6
197,990 - -0.3
198,008 + -1.2
198,009 - -0.5
198,028 + +0.1
198,029 - -0.3
198,029 - -0.4
198,036 + -0.8
198,039 + +0.4
198,040 - +0.6
198,040 - +0.2
198,264 - CA264_00925 0.26 +0.6
198,365 + CA264_00925 0.37 +0.1
198,397 + CA264_00925 0.40 -0.0
198,513 + CA264_00925 0.52 +0.3
198,514 - CA264_00925 0.52 +0.1
198,515 + CA264_00925 0.52 -0.4
198,606 + CA264_00925 0.62 -1.0
198,606 + CA264_00925 0.62 +0.1
198,634 - CA264_00925 0.64 +0.5
198,676 - CA264_00925 0.69 -0.2
198,676 - CA264_00925 0.69 -0.1
198,676 - CA264_00925 0.69 -0.6
198,676 - CA264_00925 0.69 -1.3

Or see this region's nucleotide sequence