Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00440

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00430 and CA264_00435 are separated by 22 nucleotidesCA264_00435 and CA264_00440 are separated by 71 nucleotidesCA264_00440 and CA264_00445 are separated by 710 nucleotides CA264_00430: CA264_00430 - hypothetical protein, at 93,242 to 93,706 _00430 CA264_00435: CA264_00435 - energy transducer TonB, at 93,729 to 94,136 _00435 CA264_00440: CA264_00440 - YihA family ribosome biogenesis GTP-binding protein, at 94,208 to 94,816 _00440 CA264_00445: CA264_00445 - hypothetical protein, at 95,527 to 97,518 _00445 Position (kb) 94 95Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 93.243 kb on + strandat 93.327 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.379 kb on - strand, within CA264_00430at 93.401 kb on - strand, within CA264_00430at 93.407 kb on + strand, within CA264_00430at 93.408 kb on - strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.565 kb on + strand, within CA264_00430at 93.648 kb on - strand, within CA264_00430at 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.707 kb on - strandat 93.707 kb on - strandat 93.710 kb on + strandat 93.710 kb on + strandat 93.715 kb on + strandat 93.716 kb on - strandat 93.716 kb on - strandat 93.723 kb on + strandat 93.724 kb on - strandat 93.726 kb on - strandat 93.730 kb on + strandat 93.732 kb on + strandat 93.737 kb on + strandat 93.762 kb on + strandat 93.857 kb on + strand, within CA264_00435at 93.858 kb on - strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.965 kb on - strand, within CA264_00435at 94.175 kb on + strandat 94.176 kb on - strandat 94.189 kb on - strandat 94.195 kb on - strandat 94.209 kb on + strandat 94.245 kb on - strandat 94.808 kb on + strandat 94.808 kb on + strandat 94.919 kb on + strandat 94.926 kb on + strandat 94.947 kb on + strandat 94.948 kb on - strandat 94.971 kb on + strandat 94.972 kb on - strandat 94.974 kb on - strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.978 kb on - strandat 94.978 kb on - strandat 95.075 kb on + strandat 95.076 kb on - strandat 95.177 kb on - strandat 95.180 kb on + strandat 95.181 kb on - strandat 95.226 kb on - strandat 95.256 kb on - strandat 95.291 kb on - strandat 95.310 kb on + strandat 95.401 kb on + strandat 95.401 kb on + strandat 95.402 kb on - strandat 95.402 kb on - strandat 95.402 kb on - strandat 95.412 kb on + strandat 95.424 kb on + strandat 95.510 kb on - strandat 95.534 kb on - strandat 95.624 kb on + strandat 95.625 kb on - strandat 95.662 kb on + strandat 95.663 kb on - strandat 95.683 kb on + strandat 95.684 kb on - strandat 95.684 kb on - strandat 95.684 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.729 kb on - strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.731 kb on + strand, within CA264_00445at 95.743 kb on - strand, within CA264_00445at 95.743 kb on - strand, within CA264_00445at 95.779 kb on + strand, within CA264_00445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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93,243 + -0.5
93,327 + CA264_00430 0.18 +0.5
93,378 + CA264_00430 0.29 -1.5
93,378 + CA264_00430 0.29 -0.2
93,379 - CA264_00430 0.29 +0.0
93,401 - CA264_00430 0.34 +0.2
93,407 + CA264_00430 0.35 -0.1
93,408 - CA264_00430 0.36 -1.2
93,474 + CA264_00430 0.50 +0.4
93,474 + CA264_00430 0.50 +0.0
93,537 + CA264_00430 0.63 +0.5
93,537 + CA264_00430 0.63 +0.2
93,538 - CA264_00430 0.64 +1.1
93,538 - CA264_00430 0.64 +0.7
93,565 + CA264_00430 0.69 +0.2
93,648 - CA264_00430 0.87 -0.9
93,706 + -0.9
93,706 + -0.0
93,706 + -0.1
93,706 + -0.0
93,706 + -0.1
93,707 - +0.1
93,707 - +0.4
93,710 + +0.0
93,710 + +1.0
93,715 + +0.2
93,716 - +0.5
93,716 - +0.4
93,723 + +0.3
93,724 - -0.3
93,726 - +0.3
93,730 + +0.9
93,732 + -0.1
93,737 + -0.1
93,762 + +0.8
93,857 + CA264_00435 0.31 -0.5
93,858 - CA264_00435 0.32 -0.1
93,964 + CA264_00435 0.58 -2.1
93,964 + CA264_00435 0.58 -0.3
93,964 + CA264_00435 0.58 -0.3
93,965 - CA264_00435 0.58 -0.4
94,175 + +1.2
94,176 - -0.5
94,189 - -1.2
94,195 - +0.8
94,209 + +0.6
94,245 - -0.0
94,808 + -0.3
94,808 + -1.5
94,919 + -1.2
94,926 + -1.1
94,947 + +0.0
94,948 - +1.8
94,971 + -0.7
94,972 - -0.0
94,974 - -1.9
94,977 + -3.8
94,977 + -0.6
94,977 + -0.3
94,978 - -0.4
94,978 - +0.9
95,075 + -0.3
95,076 - -1.1
95,177 - -0.7
95,180 + +0.0
95,181 - +0.3
95,226 - -1.0
95,256 - -0.4
95,291 - -0.9
95,310 + -1.3
95,401 + -1.6
95,401 + -0.4
95,402 - -0.6
95,402 - -0.8
95,402 - -0.5
95,412 + -0.9
95,424 + -0.7
95,510 - -0.2
95,534 - -0.2
95,624 + -0.3
95,625 - +0.0
95,662 + -0.5
95,663 - +0.5
95,683 + +0.0
95,684 - +0.0
95,684 - +0.0
95,684 - -0.6
95,694 - -0.3
95,694 - +1.1
95,729 - CA264_00445 0.10 -0.3
95,731 + CA264_00445 0.10 +0.8
95,731 + CA264_00445 0.10 +0.1
95,731 + CA264_00445 0.10 -0.7
95,743 - CA264_00445 0.11 +0.4
95,743 - CA264_00445 0.11 -0.4
95,779 + CA264_00445 0.13 +0.3

Or see this region's nucleotide sequence