Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3294 and Atu3295 are separated by 179 nucleotides Atu3295 and Atu3296 are separated by 88 nucleotides Atu3296 and Atu3297 are separated by 1 nucleotides
Atu3294: Atu3294 - GntR family transcriptional regulator, at 320,197 to 320,907
Atu3294
Atu3295: Atu3295 - hypothetical protein, at 321,087 to 321,599
Atu3295
Atu3296: Atu3296 - two component response regulator for C4-dicarboxylate transport, at 321,688 to 323,052
Atu3296
Atu3297: Atu3297 - two component sensor kinase for C4-dicarboxylate transport, at 323,054 to 324,436
Atu3297
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 320.690 kb on + strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.704 kb on - strand, within Atu3294 at 320.714 kb on - strand, within Atu3294 at 320.733 kb on - strand, within Atu3294 at 320.735 kb on + strand, within Atu3294 at 320.743 kb on - strand, within Atu3294 at 320.743 kb on - strand, within Atu3294 at 320.745 kb on + strand, within Atu3294 at 320.895 kb on + strand at 320.976 kb on + strand at 321.300 kb on - strand, within Atu3295 at 321.395 kb on - strand, within Atu3295 at 321.429 kb on + strand, within Atu3295 at 321.451 kb on - strand, within Atu3295 at 321.488 kb on - strand, within Atu3295 at 321.488 kb on - strand, within Atu3295 at 321.584 kb on - strand at 321.703 kb on - strand at 321.811 kb on + strand at 321.866 kb on - strand, within Atu3296 at 321.969 kb on + strand, within Atu3296 at 322.023 kb on - strand, within Atu3296 at 322.136 kb on + strand, within Atu3296 at 322.168 kb on - strand, within Atu3296 at 322.228 kb on + strand, within Atu3296 at 322.233 kb on + strand, within Atu3296 at 322.241 kb on - strand, within Atu3296 at 322.355 kb on - strand, within Atu3296 at 322.423 kb on - strand, within Atu3296 at 322.492 kb on + strand, within Atu3296 at 322.500 kb on - strand, within Atu3296 at 322.500 kb on - strand, within Atu3296 at 322.500 kb on - strand, within Atu3296 at 322.596 kb on + strand, within Atu3296 at 323.018 kb on - strand at 323.071 kb on - strand at 323.163 kb on - strand at 323.186 kb on + strand at 323.295 kb on - strand, within Atu3297 at 323.365 kb on + strand, within Atu3297 at 323.474 kb on - strand, within Atu3297 at 323.476 kb on + strand, within Atu3297 at 323.484 kb on - strand, within Atu3297 at 323.484 kb on - strand, within Atu3297 at 323.484 kb on - strand, within Atu3297 at 323.484 kb on - strand, within Atu3297 at 323.629 kb on - strand, within Atu3297 at 323.729 kb on - strand, within Atu3297 at 323.733 kb on - strand, within Atu3297 at 323.743 kb on - strand, within Atu3297 at 323.898 kb on - strand, within Atu3297 at 323.980 kb on - strand, within Atu3297 at 324.026 kb on - strand, within Atu3297
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 320,690 + Atu3294 0.69 +0.1 320,704 - Atu3294 0.71 -0.6 320,704 - Atu3294 0.71 -0.1 320,704 - Atu3294 0.71 +0.3 320,704 - Atu3294 0.71 -1.2 320,714 - Atu3294 0.73 -2.1 320,733 - Atu3294 0.75 -0.2 320,735 + Atu3294 0.76 +0.0 320,743 - Atu3294 0.77 -0.6 320,743 - Atu3294 0.77 +0.2 320,745 + Atu3294 0.77 +0.5 320,895 + +0.4 320,976 + +0.7 321,300 - Atu3295 0.42 -0.5 321,395 - Atu3295 0.60 -0.5 321,429 + Atu3295 0.67 +0.3 321,451 - Atu3295 0.71 +0.0 321,488 - Atu3295 0.78 -0.4 321,488 - Atu3295 0.78 -0.3 321,584 - +0.1 321,703 - -0.1 321,811 + -1.0 321,866 - Atu3296 0.13 -0.7 321,969 + Atu3296 0.21 -1.1 322,023 - Atu3296 0.25 -0.9 322,136 + Atu3296 0.33 -0.9 322,168 - Atu3296 0.35 -0.7 322,228 + Atu3296 0.40 +0.3 322,233 + Atu3296 0.40 -0.7 322,241 - Atu3296 0.41 -1.2 322,355 - Atu3296 0.49 -1.1 322,423 - Atu3296 0.54 -2.6 322,492 + Atu3296 0.59 -1.9 322,500 - Atu3296 0.59 -1.1 322,500 - Atu3296 0.59 -2.2 322,500 - Atu3296 0.59 -0.4 322,596 + Atu3296 0.67 -0.7 323,018 - -1.2 323,071 - -0.6 323,163 - -0.4 323,186 + -2.5 323,295 - Atu3297 0.17 -0.6 323,365 + Atu3297 0.22 -1.7 323,474 - Atu3297 0.30 -1.9 323,476 + Atu3297 0.31 -1.3 323,484 - Atu3297 0.31 -0.6 323,484 - Atu3297 0.31 +0.0 323,484 - Atu3297 0.31 -1.5 323,484 - Atu3297 0.31 -1.5 323,629 - Atu3297 0.42 -1.0 323,729 - Atu3297 0.49 -1.0 323,733 - Atu3297 0.49 -1.6 323,743 - Atu3297 0.50 -1.5 323,898 - Atu3297 0.61 -2.0 323,980 - Atu3297 0.67 -1.3 324,026 - Atu3297 0.70 -3.0
Or see this region's nucleotide sequence