Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3290 and Atu3291 are separated by 216 nucleotides Atu3291 and Atu3292 are separated by 127 nucleotides Atu3292 and Atu3293 are separated by 7 nucleotides
Atu3290: Atu3290 - phosphomethylpyrimidine kinase, at 316,117 to 316,914
Atu3290
Atu3291: Atu3291 - Lpr family transcriptional regulator, at 317,131 to 317,589
Atu3291
Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883
Atu3292
Atu3293: Atu3293 - D-amino acid dehydrogenase small subunit, at 318,891 to 320,147
Atu3293
Position (kb) 317
318
319 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 316.795 kb on - strand, within Atu3290 at 316.843 kb on - strand at 316.913 kb on + strand at 316.937 kb on - strand at 316.945 kb on + strand at 316.972 kb on + strand at 317.093 kb on - strand at 317.106 kb on + strand at 317.419 kb on + strand, within Atu3291 at 317.427 kb on - strand, within Atu3291 at 317.429 kb on + strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.459 kb on + strand, within Atu3291 at 317.514 kb on + strand, within Atu3291 at 317.548 kb on - strand at 317.548 kb on - strand at 317.862 kb on + strand, within Atu3292 at 318.050 kb on + strand, within Atu3292 at 318.068 kb on - strand, within Atu3292 at 318.081 kb on + strand, within Atu3292 at 318.094 kb on - strand, within Atu3292 at 318.158 kb on - strand, within Atu3292 at 318.162 kb on + strand, within Atu3292 at 318.162 kb on + strand, within Atu3292 at 318.170 kb on - strand, within Atu3292 at 318.170 kb on - strand, within Atu3292 at 318.196 kb on + strand, within Atu3292 at 318.221 kb on + strand, within Atu3292 at 318.223 kb on - strand, within Atu3292 at 318.246 kb on + strand, within Atu3292 at 318.268 kb on + strand, within Atu3292 at 318.383 kb on + strand, within Atu3292 at 318.383 kb on + strand, within Atu3292 at 318.386 kb on - strand, within Atu3292 at 318.550 kb on + strand, within Atu3292 at 318.568 kb on - strand, within Atu3292 at 318.614 kb on + strand, within Atu3292 at 318.622 kb on - strand, within Atu3292 at 318.627 kb on - strand, within Atu3292 at 318.671 kb on + strand, within Atu3292 at 318.684 kb on - strand, within Atu3292 at 318.699 kb on - strand, within Atu3292 at 318.730 kb on + strand, within Atu3292 at 318.735 kb on + strand, within Atu3292 at 318.735 kb on + strand, within Atu3292 at 318.747 kb on + strand, within Atu3292 at 318.947 kb on + strand at 318.954 kb on + strand at 319.059 kb on + strand, within Atu3293 at 319.097 kb on + strand, within Atu3293 at 319.153 kb on + strand, within Atu3293 at 319.273 kb on - strand, within Atu3293 at 319.303 kb on - strand, within Atu3293 at 319.326 kb on - strand, within Atu3293 at 319.355 kb on - strand, within Atu3293 at 319.423 kb on + strand, within Atu3293 at 319.489 kb on + strand, within Atu3293 at 319.489 kb on + strand, within Atu3293 at 319.509 kb on - strand, within Atu3293 at 319.574 kb on + strand, within Atu3293 at 319.686 kb on - strand, within Atu3293 at 319.790 kb on + strand, within Atu3293
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 316,795 - Atu3290 0.85 -1.4 316,843 - -0.9 316,913 + +0.8 316,937 - +0.1 316,945 + +0.5 316,972 + +0.2 317,093 - -0.1 317,106 + -0.0 317,419 + Atu3291 0.63 -1.3 317,427 - Atu3291 0.64 -3.4 317,429 + Atu3291 0.65 -4.8 317,432 - Atu3291 0.66 -1.9 317,432 - Atu3291 0.66 -3.6 317,432 - Atu3291 0.66 -0.9 317,459 + Atu3291 0.71 -2.4 317,514 + Atu3291 0.83 -3.4 317,548 - -0.6 317,548 - -3.8 317,862 + Atu3292 0.12 -3.5 318,050 + Atu3292 0.29 -4.3 318,068 - Atu3292 0.30 -2.7 318,081 + Atu3292 0.31 -1.0 318,094 - Atu3292 0.32 -3.5 318,158 - Atu3292 0.38 -1.5 318,162 + Atu3292 0.38 -3.8 318,162 + Atu3292 0.38 -3.1 318,170 - Atu3292 0.39 -2.4 318,170 - Atu3292 0.39 -3.8 318,196 + Atu3292 0.41 -4.3 318,221 + Atu3292 0.43 -2.7 318,223 - Atu3292 0.43 -1.2 318,246 + Atu3292 0.45 -4.1 318,268 + Atu3292 0.47 -3.4 318,383 + Atu3292 0.57 -3.6 318,383 + Atu3292 0.57 -2.9 318,386 - Atu3292 0.57 -2.3 318,550 + Atu3292 0.71 -2.8 318,568 - Atu3292 0.73 -3.3 318,614 + Atu3292 0.77 -4.5 318,622 - Atu3292 0.78 -0.5 318,627 - Atu3292 0.78 -2.6 318,671 + Atu3292 0.82 -2.4 318,684 - Atu3292 0.83 -3.0 318,699 - Atu3292 0.84 -0.2 318,730 + Atu3292 0.87 -1.2 318,735 + Atu3292 0.87 -1.9 318,735 + Atu3292 0.87 -4.0 318,747 + Atu3292 0.88 -0.4 318,947 + -4.5 318,954 + -5.5 319,059 + Atu3293 0.13 -2.7 319,097 + Atu3293 0.16 -6.0 319,153 + Atu3293 0.21 -3.1 319,273 - Atu3293 0.30 -2.2 319,303 - Atu3293 0.33 -3.3 319,326 - Atu3293 0.35 -2.3 319,355 - Atu3293 0.37 -2.0 319,423 + Atu3293 0.42 -0.7 319,489 + Atu3293 0.48 -0.2 319,489 + Atu3293 0.48 -2.0 319,509 - Atu3293 0.49 -1.5 319,574 + Atu3293 0.54 -2.5 319,686 - Atu3293 0.63 -3.9 319,790 + Atu3293 0.72 -2.4
Or see this region's nucleotide sequence