Strain Fitness in Pseudomonas simiae WCS417 around PS417_04890

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
1,088,244	+		PS417_04885	0.82	-0.6
1,088,245	-		PS417_04885	0.82	+1.1
1,088,315	-		PS417_04885	0.84	-0.6
1,088,315	-		PS417_04885	0.84	+0.5
1,088,470	-		PS417_04885	0.87	-1.0
1,088,470	-		PS417_04885	0.87	-1.6
1,088,473	-		PS417_04885	0.87	-0.1
1,088,514	+		PS417_04885	0.88	-0.9
1,088,515	-		PS417_04885	0.88	-0.3
1,088,533	+		PS417_04885	0.88	-1.9
1,088,535	+		PS417_04885	0.88	-1.9
1,088,535	+		PS417_04885	0.88	+0.1
1,088,535	+		PS417_04885	0.88	+0.4
1,088,535	+		PS417_04885	0.88	-2.2
1,088,536	-		PS417_04885	0.88	+0.6
1,088,536	-		PS417_04885	0.88	-1.6
1,088,536	-		PS417_04885	0.88	-1.6
1,088,639	+				+11.2
1,088,697	+				+0.1
1,088,785	+				+0.1
1,088,786	-				-0.0
1,088,815	+				+0.9
1,088,854	+				-1.4
1,089,033	+				+0.4
1,089,037	+				-0.3
1,089,038	-				-1.1
1,089,087	-				-0.7
1,089,169	-				-2.1
1,089,172	+				-0.2
1,089,172	+				+0.4
1,089,172	+				+0.1
1,089,173	-				-0.2
1,089,173	-				+0.1
1,089,173	-				-0.4
1,089,333	+				-0.8
1,089,333	+				+1.0
1,089,375	+		PS417_04890	0.12	-0.9
1,089,375	+		PS417_04890	0.12	+0.2
1,089,376	-		PS417_04890	0.12	-0.3
1,089,380	-		PS417_04890	0.12	-0.3
1,089,380	-		PS417_04890	0.12	+0.3
1,089,655	+		PS417_04890	0.31	+1.0
1,089,656	-				-0.6
1,089,656	-		PS417_04890	0.31	-0.3
1,089,667	+		PS417_04890	0.32	-0.9
1,089,667	+		PS417_04890	0.32	+0.5
1,089,668	-				+0.4
1,089,668	-		PS417_04890	0.32	+0.2
1,089,691	+		PS417_04890	0.33	-0.9
1,089,691	+		PS417_04890	0.33	-0.4
1,089,691	+		PS417_04890	0.33	-1.0
1,089,691	+		PS417_04890	0.33	+0.8
1,089,691	+		PS417_04890	0.33	-1.7
1,089,691	+		PS417_04890	0.33	-1.6
1,089,691	+		PS417_04890	0.33	-1.2
1,089,692	-		PS417_04890	0.33	-0.1
1,089,692	-		PS417_04890	0.33	-1.7
1,089,692	-				-0.2
1,089,692	-		PS417_04890	0.33	-2.3
1,089,692	-		PS417_04890	0.33	-1.6
1,089,692	-		PS417_04890	0.33	-1.0
1,089,692	-				+0.4
1,089,692	-		PS417_04890	0.33	+0.5
1,089,909	+		PS417_04890	0.48	-1.8
1,089,922	-		PS417_04890	0.49	+0.4
1,089,922	-		PS417_04890	0.49	-0.8
1,089,922	-		PS417_04890	0.49	-1.7
1,089,922	-		PS417_04890	0.49	+0.9
1,090,056	+		PS417_04890	0.58	+0.4
1,090,056	+		PS417_04890	0.58	-0.9
1,090,057	-		PS417_04890	0.58	-2.9
1,090,057	-		PS417_04890	0.58	+1.0
1,090,057	-		PS417_04890	0.58	-0.4
1,090,057	-		PS417_04890	0.58	+0.9
1,090,072	+		PS417_04890	0.59	-3.5
1,090,159	+		PS417_04890	0.65	-0.4
1,090,159	+		PS417_04890	0.65	-1.0
1,090,160	-		PS417_04890	0.65	+0.4
1,090,160	-		PS417_04890	0.65	-0.4
1,090,710	+				-3.0
1,090,711	-				+0.4
1,090,711	-				+0.9
1,090,747	+				-0.2
1,090,747	+				-0.3
1,090,747	+				+0.2
1,090,748	-				+3.3
1,090,748	-				+1.7
1,090,753	+				-1.0
1,090,753	+				-0.9
1,090,753	+				-0.7
1,090,754	-				+1.3
1,090,754	-				-1.9
1,090,754	-				-0.3
1,090,757	+				+0.5
1,090,758	-				-1.6
1,090,758	-				+0.3
1,090,758	-				-0.2
1,090,758	-				-0.0
1,090,809	+				-0.7
1,090,810	-				-1.6
1,090,843	+		PS417_04895	0.11	+0.8
1,090,945	-		PS417_04895	0.27	+1.1
1,091,005	+		PS417_04895	0.36	-2.6
1,091,006	-		PS417_04895	0.36	-0.9
1,091,006	-		PS417_04895	0.36	-1.1
1,091,119	-		PS417_04895	0.53	+0.3
1,091,242	+		PS417_04895	0.72	-0.5
1,091,376	+				+0.0
1,091,376	+				+2.8
1,091,459	-				-0.2
1,091,496	-				-0.9
1,091,577	+				+1.3
1,091,577	+				+1.8
1,091,583	+				+1.0
1,091,584	-				+0.5
1,091,620	-				-0.7