Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04430 and PS417_04435 are separated by 2 nucleotides PS417_04435 and PS417_04440 are separated by 164 nucleotides PS417_04440 and PS417_04445 are separated by 3 nucleotides
PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795
_04430
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629
_04445
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 984.842 kb on - strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.939 kb on + strand, within PS417_04430 at 984.940 kb on - strand, within PS417_04430 at 984.940 kb on - strand at 985.210 kb on - strand, within PS417_04430 at 985.381 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.421 kb on - strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.863 kb on - strand, within PS417_04435 at 985.901 kb on + strand, within PS417_04435 at 985.939 kb on + strand, within PS417_04435 at 985.940 kb on - strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand at 986.814 kb on + strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.105 kb on + strand at 987.114 kb on + strand at 987.138 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.157 kb on - strand at 987.157 kb on - strand at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 984,842 - PS417_04430 0.25 +2.6 984,900 + PS417_04430 0.30 +0.7 984,900 + PS417_04430 0.30 +0.1 984,900 + PS417_04430 0.30 +0.1 984,939 + PS417_04430 0.33 -0.3 984,940 - PS417_04430 0.33 +0.7 984,940 - -1.9 985,210 - PS417_04430 0.54 -1.0 985,381 + PS417_04430 0.67 +0.2 985,420 + PS417_04430 0.71 -0.0 985,420 + PS417_04430 0.71 -0.5 985,421 - PS417_04430 0.71 +0.9 985,504 + PS417_04430 0.77 +0.9 985,504 + PS417_04430 0.77 +1.7 985,505 - PS417_04430 0.77 +1.1 985,505 - PS417_04430 0.77 +1.3 985,506 + PS417_04430 0.77 +1.4 985,506 + PS417_04430 0.77 +1.3 985,506 + PS417_04430 0.77 +1.6 985,507 - PS417_04430 0.77 -0.0 985,507 - PS417_04430 0.77 +0.4 985,862 + PS417_04435 0.10 +1.2 985,862 + PS417_04435 0.10 +0.9 985,862 + PS417_04435 0.10 +1.7 985,863 - PS417_04435 0.10 +2.2 985,901 + PS417_04435 0.16 -0.5 985,939 + PS417_04435 0.22 +1.7 985,940 - PS417_04435 0.22 +1.9 986,099 + PS417_04435 0.47 +0.9 986,099 + PS417_04435 0.47 +1.8 986,100 - PS417_04435 0.47 +2.5 986,100 - PS417_04435 0.47 +1.8 986,100 - PS417_04435 0.47 +1.1 986,100 - PS417_04435 0.47 +2.0 986,176 + PS417_04435 0.59 +1.6 986,177 - PS417_04435 0.59 +1.7 986,177 - PS417_04435 0.59 +2.0 986,177 - PS417_04435 0.59 +0.5 986,233 - PS417_04435 0.68 +2.2 986,283 - PS417_04435 0.76 +1.5 986,315 + PS417_04435 0.81 +1.9 986,316 - PS417_04435 0.81 +0.2 986,316 - PS417_04435 0.81 +0.7 986,367 + PS417_04435 0.89 +0.6 986,368 - PS417_04435 0.89 +0.9 986,385 + +1.3 986,386 - +1.2 986,477 + +1.6 986,478 - -1.1 986,500 + +2.1 986,500 + +3.5 986,502 + +0.7 986,502 + +1.1 986,502 + +2.5 986,502 + +1.7 986,502 + +0.8 986,502 + +2.8 986,503 - +1.4 986,510 + +0.9 986,510 + +0.7 986,511 - -3.1 986,513 + +0.1 986,513 + +1.4 986,513 + +1.3 986,513 + -1.0 986,514 - -1.0 986,514 - -1.1 986,514 - +1.4 986,514 - -1.4 986,555 + -1.4 986,555 + +0.6 986,655 + -0.7 986,814 + PS417_04440 0.38 -0.5 987,055 - PS417_04440 0.81 -2.0 987,055 - PS417_04440 0.81 -0.6 987,105 + -0.6 987,114 + +0.0 987,138 + -1.7 987,156 + +0.4 987,156 + +1.4 987,156 + -0.8 987,157 - -3.1 987,157 - -0.9 987,303 + PS417_04445 0.30 -0.2 987,303 + PS417_04445 0.30 +0.4 987,303 + PS417_04445 0.30 +0.6 987,303 + PS417_04445 0.30 +1.3 987,304 - PS417_04445 0.30 +0.1 987,304 - PS417_04445 0.30 -0.5 987,304 - PS417_04445 0.30 +1.2 987,304 - PS417_04445 0.30 -0.6
Or see this region's nucleotide sequence