Strain Fitness in Pseudomonas simiae WCS417 around PS417_04325

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04320 and PS417_04325 are separated by 88 nucleotidesPS417_04325 and PS417_04330 are separated by 16 nucleotidesPS417_04330 and PS417_04335 are separated by 2 nucleotides PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963 _04320 PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324 _04325 PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198 _04330 PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665 _04335 Position (kb) 969 970Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 968.059 kb on + strandat 968.059 kb on + strandat 968.059 kb on + strandat 968.059 kb on + strandat 968.138 kb on - strandat 968.148 kb on - strandat 968.432 kb on + strand, within PS417_04320at 968.432 kb on + strandat 968.432 kb on + strand, within PS417_04320at 968.433 kb on - strand, within PS417_04320at 968.454 kb on + strand, within PS417_04320at 968.534 kb on + strand, within PS417_04320at 968.961 kb on + strandat 968.979 kb on - strandat 968.979 kb on - strandat 969.042 kb on + strandat 969.042 kb on + strandat 969.043 kb on - strandat 969.071 kb on + strandat 969.071 kb on + strandat 969.072 kb on - strandat 969.072 kb on - strandat 969.075 kb on + strandat 969.075 kb on + strandat 969.075 kb on + strandat 969.076 kb on - strandat 969.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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968,059 + -1.8
968,059 + +0.5
968,059 + -0.7
968,059 + +1.6
968,138 - +0.5
968,148 - -0.8
968,432 + PS417_04320 0.40 +1.9
968,432 + +5.1
968,432 + PS417_04320 0.40 -0.1
968,433 - PS417_04320 0.41 -0.7
968,454 + PS417_04320 0.43 +0.1
968,534 + PS417_04320 0.52 +0.1
968,961 + -0.5
968,979 - -0.1
968,979 - +0.2
969,042 + -0.8
969,042 + -0.8
969,043 - -0.7
969,071 + -0.1
969,071 + -1.8
969,072 - -2.6
969,072 - -1.2
969,075 + +1.5
969,075 + -0.8
969,075 + -0.2
969,076 - -2.5
969,346 + +1.1

Or see this region's nucleotide sequence