Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04320 and PS417_04325 are separated by 88 nucleotides PS417_04325 and PS417_04330 are separated by 16 nucleotides PS417_04330 and PS417_04335 are separated by 2 nucleotides
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324
_04325
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665
_04335
Position (kb)
969
970 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.138 kb on - strand at 968.148 kb on - strand at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand at 969.042 kb on + strand at 969.042 kb on + strand at 969.043 kb on - strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.072 kb on - strand at 969.072 kb on - strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.076 kb on - strand at 969.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 968,059 + -1.8 968,059 + +0.5 968,059 + -0.7 968,059 + +1.6 968,138 - +0.5 968,148 - -0.8 968,432 + PS417_04320 0.40 +1.9 968,432 + +5.1 968,432 + PS417_04320 0.40 -0.1 968,433 - PS417_04320 0.41 -0.7 968,454 + PS417_04320 0.43 +0.1 968,534 + PS417_04320 0.52 +0.1 968,961 + -0.5 968,979 - -0.1 968,979 - +0.2 969,042 + -0.8 969,042 + -0.8 969,043 - -0.7 969,071 + -0.1 969,071 + -1.8 969,072 - -2.6 969,072 - -1.2 969,075 + +1.5 969,075 + -0.8 969,075 + -0.2 969,076 - -2.5 969,346 + +1.1
Or see this region's nucleotide sequence