Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00415 and PS417_00420 are separated by 34 nucleotides PS417_00420 and PS417_00425 are separated by 168 nucleotides PS417_00425 and PS417_00430 are separated by 10 nucleotides PS417_00430 and PS417_00435 overlap by 4 nucleotides
PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161
_00415
PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822
_00420
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515
_00430
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.159 kb on + strand at 82.159 kb on + strand at 82.159 kb on + strand at 82.166 kb on + strand at 82.821 kb on - strand at 82.832 kb on - strand at 82.849 kb on - strand at 82.868 kb on - strand at 82.971 kb on + strand at 82.985 kb on + strand at 83.624 kb on + strand at 83.790 kb on + strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 84.189 kb on + strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.213 kb on + strand, within PS417_00430 at 84.214 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.371 kb on + strand, within PS417_00430 at 84.551 kb on - strand at 84.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 82,159 + -2.1 82,159 + -0.4 82,159 + -1.6 82,166 + +0.3 82,821 - +2.3 82,832 - -2.7 82,849 - +1.1 82,868 - -0.9 82,971 + +1.1 82,985 + -0.3 83,624 + +2.7 83,790 + PS417_00430 0.17 +0.7 83,791 - PS417_00430 0.18 +0.7 83,791 - PS417_00430 0.18 +0.7 83,791 - PS417_00430 0.18 +1.5 84,189 + PS417_00430 0.63 +1.9 84,190 - PS417_00430 0.63 +1.3 84,190 - PS417_00430 0.63 +1.0 84,190 - PS417_00430 0.63 +2.3 84,213 + PS417_00430 0.66 +0.5 84,214 - PS417_00430 0.66 +0.2 84,357 - PS417_00430 0.82 +1.5 84,357 - PS417_00430 0.82 +1.4 84,371 + PS417_00430 0.84 +1.7 84,551 - -0.4 84,551 - -0.0
Or see this region's nucleotide sequence