Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00410 and PS417_00415 are separated by 192 nucleotides PS417_00415 and PS417_00420 are separated by 34 nucleotides PS417_00420 and PS417_00425 are separated by 168 nucleotides
PS417_00410: PS417_00410 - GTP-binding protein, at 81,025 to 81,666
_00410
PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161
_00415
PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822
_00420
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 80.911 kb on + strand at 80.911 kb on + strand at 80.911 kb on + strand at 80.911 kb on + strand at 80.912 kb on - strand at 80.912 kb on - strand at 80.912 kb on - strand at 80.921 kb on + strand at 80.921 kb on + strand at 80.921 kb on + strand at 80.936 kb on - strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.742 kb on + strand at 81.809 kb on + strand at 81.809 kb on + strand at 81.937 kb on + strand, within PS417_00415 at 82.159 kb on + strand at 82.159 kb on + strand at 82.159 kb on + strand at 82.166 kb on + strand at 82.821 kb on - strand at 82.832 kb on - strand at 82.849 kb on - strand at 82.868 kb on - strand at 82.971 kb on + strand at 82.985 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 80,911 + -0.3 80,911 + -0.7 80,911 + +0.7 80,911 + +1.9 80,912 - +0.4 80,912 - -1.2 80,912 - -0.6 80,921 + -0.6 80,921 + -1.1 80,921 + -0.1 80,936 - -2.2 81,740 + +0.8 81,740 + -0.3 81,740 + -2.0 81,740 + -0.8 81,742 + +0.7 81,809 + +1.0 81,809 + -0.3 81,937 + PS417_00415 0.26 +1.9 82,159 + -2.1 82,159 + -0.4 82,159 + -1.6 82,166 + +0.3 82,821 - +2.3 82,832 - -2.7 82,849 - +1.1 82,868 - -0.9 82,971 + +1.1 82,985 + -0.3
Or see this region's nucleotide sequence