Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04145 and PS417_04150 are separated by 14 nucleotides PS417_04150 and PS417_04155 are separated by 266 nucleotides PS417_04155 and PS417_04160 overlap by 1 nucleotides
PS417_04145: PS417_04145 - 50S ribosomal protein L13, at 932,305 to 932,733
_04145
PS417_04150: PS417_04150 - 30S ribosomal protein S9, at 932,748 to 933,140
_04150
PS417_04155: PS417_04155 - ubiquinol-cytochrome C reductase, at 933,407 to 934,000
_04155
PS417_04160: PS417_04160 - cytochrome B, at 934,000 to 935,211
_04160
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 933.209 kb on + strand at 933.210 kb on - strand at 933.210 kb on - strand at 933.210 kb on - strand at 933.255 kb on + strand at 933.256 kb on - strand at 933.257 kb on + strand at 933.258 kb on - strand at 933.258 kb on - strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.260 kb on + strand at 933.261 kb on - strand at 933.261 kb on - strand at 933.301 kb on + strand at 933.343 kb on + strand at 933.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 933,209 + +0.9 933,210 - -1.6 933,210 - -1.3 933,210 - +0.0 933,255 + -0.6 933,256 - -1.1 933,257 + -3.6 933,258 - -0.1 933,258 - -0.2 933,260 + +1.5 933,260 + -1.3 933,260 + -0.4 933,260 + -2.1 933,261 - -0.4 933,261 - +1.1 933,301 + +1.6 933,343 + -0.5 933,361 + -0.3
Or see this region's nucleotide sequence