Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04135 and PS417_04140 are separated by 112 nucleotides PS417_04140 and PS417_04145 are separated by 248 nucleotides PS417_04145 and PS417_04150 are separated by 14 nucleotides
PS417_04135: PS417_04135 - acyl-CoA dehydrogenase, at 929,767 to 930,903
_04135
PS417_04140: PS417_04140 - aldo/keto reductase, at 931,016 to 932,056
_04140
PS417_04145: PS417_04145 - 50S ribosomal protein L13, at 932,305 to 932,733
_04145
PS417_04150: PS417_04150 - 30S ribosomal protein S9, at 932,748 to 933,140
_04150
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 930.058 kb on + strand, within PS417_04135 at 930.059 kb on - strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.212 kb on - strand, within PS417_04135 at 930.241 kb on - strand, within PS417_04135 at 930.250 kb on + strand, within PS417_04135 at 930.470 kb on - strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135 at 930.730 kb on + strand, within PS417_04135 at 930.730 kb on + strand, within PS417_04135 at 930.798 kb on + strand at 930.809 kb on - strand at 930.853 kb on + strand at 930.853 kb on + strand at 930.965 kb on + strand at 930.966 kb on - strand at 931.264 kb on - strand, within PS417_04140 at 931.282 kb on - strand, within PS417_04140 at 931.282 kb on - strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.417 kb on + strand, within PS417_04140 at 931.418 kb on - strand, within PS417_04140 at 931.620 kb on + strand, within PS417_04140 at 931.671 kb on + strand, within PS417_04140 at 931.766 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.872 kb on + strand at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140 at 932.085 kb on - strand at 932.118 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 930,058 + PS417_04135 0.26 -0.3 930,059 - PS417_04135 0.26 +0.8 930,097 + PS417_04135 0.29 +0.1 930,097 + PS417_04135 0.29 +0.4 930,098 - PS417_04135 0.29 +1.6 930,098 - PS417_04135 0.29 -0.5 930,211 + PS417_04135 0.39 +0.5 930,211 + PS417_04135 0.39 -0.2 930,211 + PS417_04135 0.39 -0.5 930,212 - PS417_04135 0.39 -0.5 930,241 - PS417_04135 0.42 +0.3 930,250 + PS417_04135 0.42 -2.8 930,470 - PS417_04135 0.62 +0.5 930,559 + PS417_04135 0.70 -0.4 930,559 + PS417_04135 0.70 -0.0 930,559 + PS417_04135 0.70 +0.2 930,560 - PS417_04135 0.70 +1.9 930,560 - PS417_04135 0.70 +0.2 930,730 + PS417_04135 0.85 +0.9 930,730 + PS417_04135 0.85 +0.6 930,798 + -1.4 930,809 - -0.2 930,853 + -2.2 930,853 + -2.0 930,965 + -0.8 930,966 - -2.2 931,264 - PS417_04140 0.24 -2.4 931,282 - PS417_04140 0.26 -1.7 931,282 - PS417_04140 0.26 -1.5 931,323 + PS417_04140 0.29 -0.7 931,323 + PS417_04140 0.29 +0.1 931,323 + PS417_04140 0.29 -1.0 931,324 - PS417_04140 0.30 -2.0 931,324 - PS417_04140 0.30 +1.2 931,324 - PS417_04140 0.30 -0.7 931,324 - PS417_04140 0.30 -1.5 931,417 + PS417_04140 0.39 +5.3 931,418 - PS417_04140 0.39 -1.3 931,620 + PS417_04140 0.58 +0.7 931,671 + PS417_04140 0.63 -1.5 931,766 - PS417_04140 0.72 -0.0 931,768 - PS417_04140 0.72 -1.9 931,768 - PS417_04140 0.72 -1.1 931,855 - PS417_04140 0.81 +0.5 931,855 - PS417_04140 0.81 +0.1 931,872 + +1.5 931,872 + PS417_04140 0.82 -1.0 931,872 + PS417_04140 0.82 -0.3 931,872 + PS417_04140 0.82 -0.0 931,872 + PS417_04140 0.82 -0.5 931,872 + PS417_04140 0.82 -2.0 931,873 - PS417_04140 0.82 +0.4 931,873 - PS417_04140 0.82 -2.7 932,085 - -2.2 932,118 + +3.1
Or see this region's nucleotide sequence