Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03535 and PS417_03540 are separated by 2 nucleotides PS417_03540 and PS417_03545 overlap by 8 nucleotides PS417_03545 and PS417_03550 are separated by 6 nucleotides PS417_03550 and PS417_03555 are separated by 473 nucleotides
PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115
_03535
PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675
_03540
PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489
_03545
PS417_03550: PS417_03550 - hypothetical protein, at 809,496 to 809,858
_03550
PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258
_03555
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 807.734 kb on + strand, within PS417_03535 at 807.735 kb on - strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.780 kb on - strand, within PS417_03535 at 807.782 kb on + strand, within PS417_03535 at 807.810 kb on + strand, within PS417_03535 at 807.811 kb on - strand, within PS417_03535 at 807.822 kb on - strand, within PS417_03535 at 807.921 kb on + strand, within PS417_03535 at 807.975 kb on + strand, within PS417_03535 at 807.975 kb on + strand at 807.975 kb on + strand, within PS417_03535 at 807.976 kb on - strand, within PS417_03535 at 807.978 kb on + strand, within PS417_03535 at 807.979 kb on - strand, within PS417_03535 at 808.031 kb on - strand, within PS417_03535 at 808.119 kb on + strand at 808.174 kb on + strand, within PS417_03540 at 808.248 kb on - strand, within PS417_03540 at 808.256 kb on + strand, within PS417_03540 at 808.256 kb on + strand, within PS417_03540 at 808.384 kb on + strand, within PS417_03540 at 808.385 kb on - strand, within PS417_03540 at 808.385 kb on - strand, within PS417_03540 at 808.499 kb on + strand, within PS417_03540 at 808.500 kb on - strand, within PS417_03540 at 808.524 kb on - strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.585 kb on + strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.629 kb on + strand at 808.629 kb on + strand at 808.629 kb on + strand at 808.630 kb on - strand at 808.630 kb on - strand at 808.631 kb on + strand at 808.632 kb on - strand at 808.669 kb on + strand at 808.669 kb on + strand at 808.772 kb on + strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.870 kb on + strand, within PS417_03545 at 808.894 kb on + strand, within PS417_03545 at 808.895 kb on - strand, within PS417_03545 at 809.018 kb on + strand at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.165 kb on - strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.169 kb on - strand, within PS417_03545 at 809.170 kb on + strand, within PS417_03545 at 809.171 kb on - strand, within PS417_03545 at 809.234 kb on + strand, within PS417_03545 at 809.339 kb on + strand, within PS417_03545 at 809.374 kb on - strand, within PS417_03545 at 809.376 kb on + strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.429 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.655 kb on - strand, within PS417_03550 at 809.673 kb on + strand, within PS417_03550 at 809.717 kb on + strand, within PS417_03550 at 809.718 kb on - strand, within PS417_03550 at 809.828 kb on + strand at 809.829 kb on - strand at 810.029 kb on + strand at 810.168 kb on - strand at 810.168 kb on - strand at 810.187 kb on - strand at 810.192 kb on + strand at 810.294 kb on + strand at 810.294 kb on + strand at 810.295 kb on - strand at 810.295 kb on - strand at 810.311 kb on - strand at 810.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 807,734 + PS417_03535 0.38 -0.9 807,735 - PS417_03535 0.38 +1.6 807,779 + PS417_03535 0.45 -0.7 807,779 + PS417_03535 0.45 -1.3 807,780 - PS417_03535 0.45 -2.6 807,782 + PS417_03535 0.45 +1.2 807,810 + PS417_03535 0.50 +1.6 807,811 - PS417_03535 0.50 -0.3 807,822 - PS417_03535 0.52 +0.7 807,921 + PS417_03535 0.68 -0.1 807,975 + PS417_03535 0.77 -0.1 807,975 + +1.3 807,975 + PS417_03535 0.77 +0.5 807,976 - PS417_03535 0.77 +1.7 807,978 + PS417_03535 0.77 -0.2 807,979 - PS417_03535 0.78 -0.9 808,031 - PS417_03535 0.86 +0.3 808,119 + -1.7 808,174 + PS417_03540 0.10 +0.8 808,248 - PS417_03540 0.23 -1.1 808,256 + PS417_03540 0.25 +1.9 808,256 + PS417_03540 0.25 +0.4 808,384 + PS417_03540 0.48 -0.8 808,385 - PS417_03540 0.48 -0.1 808,385 - PS417_03540 0.48 -1.7 808,499 + PS417_03540 0.68 -2.8 808,500 - PS417_03540 0.68 -1.8 808,524 - PS417_03540 0.73 +0.5 808,583 + PS417_03540 0.83 +0.1 808,583 + PS417_03540 0.83 +0.5 808,584 - PS417_03540 0.84 +0.1 808,584 - PS417_03540 0.84 +1.8 808,584 - PS417_03540 0.84 +1.3 808,585 + PS417_03540 0.84 +1.2 808,586 - PS417_03540 0.84 +0.2 808,586 - PS417_03540 0.84 -0.3 808,586 - PS417_03540 0.84 +0.9 808,596 + PS417_03540 0.86 +1.3 808,596 + PS417_03540 0.86 -0.8 808,596 + PS417_03540 0.86 -0.2 808,629 + -1.5 808,629 + -0.1 808,629 + -1.8 808,630 - -0.0 808,630 - -0.5 808,631 + -0.6 808,632 - -1.7 808,669 + -0.7 808,669 + +0.7 808,772 + PS417_03545 0.13 -0.3 808,773 - PS417_03545 0.13 +0.6 808,773 - PS417_03545 0.13 -0.9 808,773 - PS417_03545 0.13 -0.5 808,870 + PS417_03545 0.25 -2.9 808,894 + PS417_03545 0.27 -0.0 808,895 - PS417_03545 0.28 -2.8 809,018 + +0.5 809,164 + PS417_03545 0.60 +0.1 809,164 + PS417_03545 0.60 +1.5 809,164 + PS417_03545 0.60 -0.0 809,164 + PS417_03545 0.60 +0.4 809,164 + PS417_03545 0.60 +0.6 809,165 - PS417_03545 0.60 -0.4 809,168 + PS417_03545 0.61 -1.0 809,168 + PS417_03545 0.61 -0.3 809,168 + PS417_03545 0.61 +0.5 809,168 + PS417_03545 0.61 +0.6 809,168 + PS417_03545 0.61 -3.7 809,169 - PS417_03545 0.61 -1.3 809,170 + PS417_03545 0.61 +0.3 809,171 - PS417_03545 0.61 +0.1 809,234 + PS417_03545 0.69 +0.3 809,339 + PS417_03545 0.82 -0.3 809,374 - PS417_03545 0.86 -1.7 809,376 + PS417_03545 0.86 -0.8 809,401 - PS417_03545 0.89 -2.2 809,401 - PS417_03545 0.89 -0.2 809,429 + +0.7 809,457 + -0.5 809,457 + +0.0 809,457 + +1.3 809,458 - +0.2 809,458 - -1.0 809,458 - +1.6 809,655 - PS417_03550 0.44 -0.1 809,673 + PS417_03550 0.49 -0.7 809,717 + PS417_03550 0.61 +0.5 809,718 - PS417_03550 0.61 +0.2 809,828 + +0.5 809,829 - -0.4 810,029 + +0.2 810,168 - -2.1 810,168 - -0.8 810,187 - +2.5 810,192 + -0.2 810,294 + -0.5 810,294 + +1.0 810,295 - -0.8 810,295 - +0.7 810,311 - +0.3 810,424 + -0.2
Or see this region's nucleotide sequence