Strain Fitness in Pseudomonas simiae WCS417 around PS417_03520

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03505 and PS417_03510 are separated by 0 nucleotidesPS417_03510 and PS417_03515 are separated by 11 nucleotidesPS417_03515 and PS417_03520 overlap by 4 nucleotidesPS417_03520 and PS417_03525 are separated by 14 nucleotidesPS417_03525 and PS417_03530 are separated by 1 nucleotidesPS417_03530 and PS417_03535 are separated by 74 nucleotides PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110 _03505 PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449 _03510 PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664 _03515 PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802 _03520 PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209 _03525 PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429 _03530 PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115 _03535 Position (kb) 804 805 806 807Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 803.745 kb on + strand, within PS417_03505at 803.842 kb on - strand, within PS417_03505at 803.855 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 804.229 kb on + strand, within PS417_03510at 804.230 kb on - strand, within PS417_03510at 804.230 kb on - strand, within PS417_03510at 804.233 kb on + strand, within PS417_03510at 804.233 kb on + strand, within PS417_03510at 804.605 kb on - strand, within PS417_03515at 804.752 kb on - strandat 804.752 kb on - strandat 804.890 kb on + strand, within PS417_03520at 805.137 kb on - strand, within PS417_03520at 805.416 kb on + strand, within PS417_03520at 805.416 kb on + strand, within PS417_03520at 805.426 kb on + strand, within PS417_03520at 805.501 kb on + strand, within PS417_03520at 805.527 kb on - strand, within PS417_03520at 805.547 kb on + strand, within PS417_03520at 805.547 kb on + strand, within PS417_03520at 805.547 kb on + strand, within PS417_03520at 805.547 kb on + strand, within PS417_03520at 805.547 kb on + strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.548 kb on - strand, within PS417_03520at 805.776 kb on + strand, within PS417_03520at 805.777 kb on - strand, within PS417_03520at 805.777 kb on - strand, within PS417_03520at 805.880 kb on + strand, within PS417_03520at 805.880 kb on + strand, within PS417_03520at 805.881 kb on - strand, within PS417_03520at 805.903 kb on + strand, within PS417_03520at 805.903 kb on + strand, within PS417_03520at 806.279 kb on + strand, within PS417_03520at 806.279 kb on + strand, within PS417_03520at 806.605 kb on + strandat 806.796 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.803 kb on - strandat 806.803 kb on - strandat 806.803 kb on - strandat 806.818 kb on + strandat 807.132 kb on + strand, within PS417_03525at 807.162 kb on + strand, within PS417_03525at 807.187 kb on + strandat 807.273 kb on - strand, within PS417_03530at 807.278 kb on + strand, within PS417_03530at 807.359 kb on + strand, within PS417_03530at 807.360 kb on - strand, within PS417_03530at 807.378 kb on + strand, within PS417_03530at 807.378 kb on + strand, within PS417_03530at 807.436 kb on - strandat 807.436 kb on - strandat 807.480 kb on - strandat 807.491 kb on + strandat 807.527 kb on + strandat 807.527 kb on + strandat 807.616 kb on - strandat 807.734 kb on + strand, within PS417_03535at 807.735 kb on - strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.780 kb on - strand, within PS417_03535at 807.782 kb on + strand, within PS417_03535

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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803,745 + PS417_03505 0.67 +0.7
803,842 - PS417_03505 0.76 +1.9
803,855 + PS417_03505 0.77 -0.2
803,956 + PS417_03505 0.86 +0.4
803,956 + PS417_03505 0.86 -0.5
803,956 + PS417_03505 0.86 -0.1
803,957 - PS417_03505 0.86 +0.1
803,957 - PS417_03505 0.86 -1.7
803,957 - PS417_03505 0.86 -2.2
803,957 - PS417_03505 0.86 +0.6
804,229 + PS417_03510 0.35 +0.7
804,230 - PS417_03510 0.35 +0.4
804,230 - PS417_03510 0.35 +1.7
804,233 + PS417_03510 0.36 -0.4
804,233 + PS417_03510 0.36 -0.7
804,605 - PS417_03515 0.71 -0.2
804,752 - -2.4
804,752 - +2.0
804,890 + PS417_03520 0.11 +0.5
805,137 - PS417_03520 0.22 +0.1
805,416 + PS417_03520 0.35 -3.2
805,416 + PS417_03520 0.35 +0.2
805,426 + PS417_03520 0.36 +0.7
805,501 + PS417_03520 0.39 +2.5
805,527 - PS417_03520 0.40 -0.3
805,547 + PS417_03520 0.41 +0.1
805,547 + PS417_03520 0.41 +3.3
805,547 + PS417_03520 0.41 +0.9
805,547 + PS417_03520 0.41 -0.2
805,547 + PS417_03520 0.41 +0.2
805,548 - PS417_03520 0.41 +1.0
805,548 - PS417_03520 0.41 -1.4
805,548 - PS417_03520 0.41 +0.7
805,548 - PS417_03520 0.41 +2.0
805,548 - PS417_03520 0.41 +0.2
805,548 - PS417_03520 0.41 +0.3
805,776 + PS417_03520 0.52 +1.9
805,777 - PS417_03520 0.52 -2.1
805,777 - PS417_03520 0.52 -1.9
805,880 + PS417_03520 0.57 -0.4
805,880 + PS417_03520 0.57 -0.2
805,881 - PS417_03520 0.57 +0.5
805,903 + PS417_03520 0.58 +0.7
805,903 + PS417_03520 0.58 -0.6
806,279 + PS417_03520 0.76 -3.7
806,279 + PS417_03520 0.76 +0.2
806,605 + -0.2
806,796 + +0.0
806,802 + -1.1
806,802 + +0.1
806,802 + -2.6
806,802 + -1.0
806,802 + -0.9
806,802 + -0.0
806,803 - -0.6
806,803 - +0.9
806,803 - +1.4
806,818 + -0.1
807,132 + PS417_03525 0.80 -1.3
807,162 + PS417_03525 0.88 -0.9
807,187 + +0.6
807,273 - PS417_03530 0.28 +0.3
807,278 + PS417_03530 0.31 -0.7
807,359 + PS417_03530 0.68 -0.4
807,360 - PS417_03530 0.68 -1.6
807,378 + PS417_03530 0.76 -0.8
807,378 + PS417_03530 0.76 +0.4
807,436 - -0.7
807,436 - -2.0
807,480 - -0.4
807,491 + -1.3
807,527 + -0.2
807,527 + -1.1
807,616 - -0.1
807,734 + PS417_03535 0.38 -0.9
807,735 - PS417_03535 0.38 +1.6
807,779 + PS417_03535 0.45 -0.7
807,779 + PS417_03535 0.45 -1.3
807,780 - PS417_03535 0.45 -2.6
807,782 + PS417_03535 0.45 +1.2

Or see this region's nucleotide sequence