Strain Fitness in Pseudomonas simiae WCS417 around PS417_03245

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03240 and PS417_03245 are separated by 125 nucleotidesPS417_03245 and PS417_03250 are separated by 39 nucleotides PS417_03240: PS417_03240 - LysR family transcriptional regulator, at 739,993 to 740,913 _03240 PS417_03245: PS417_03245 - omega amino acid--pyruvate aminotransferase, at 741,039 to 742,388 _03245 PS417_03250: PS417_03250 - methylmalonate-semialdehyde dehydrogenase, at 742,428 to 743,924 _03250 Position (kb) 741 742 743Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 740.240 kb on + strand, within PS417_03240at 740.240 kb on + strand, within PS417_03240at 740.323 kb on - strand, within PS417_03240at 740.333 kb on + strand, within PS417_03240at 740.334 kb on - strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.441 kb on - strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.737 kb on + strand, within PS417_03240at 740.913 kb on + strandat 740.981 kb on + strandat 740.981 kb on + strandat 741.122 kb on + strandat 741.165 kb on - strandat 741.439 kb on - strand, within PS417_03245at 741.439 kb on - strand, within PS417_03245at 741.448 kb on + strand, within PS417_03245at 741.548 kb on + strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245at 741.960 kb on + strand, within PS417_03245at 741.961 kb on - strand, within PS417_03245at 741.961 kb on - strand, within PS417_03245at 741.993 kb on + strand, within PS417_03245at 742.023 kb on + strand, within PS417_03245at 742.023 kb on + strand, within PS417_03245at 742.024 kb on - strand, within PS417_03245at 742.179 kb on + strand, within PS417_03245at 742.276 kb on - strandat 742.276 kb on - strandat 742.399 kb on + strandat 742.399 kb on + strandat 742.400 kb on - strandat 742.400 kb on - strandat 742.400 kb on - strandat 742.401 kb on + strandat 742.402 kb on - strandat 742.402 kb on - strandat 742.403 kb on + strandat 742.403 kb on + strandat 742.404 kb on - strandat 742.404 kb on - strandat 742.404 kb on - strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.495 kb on - strandat 742.495 kb on - strandat 742.670 kb on + strand, within PS417_03250at 742.671 kb on - strand, within PS417_03250at 742.756 kb on - strand, within PS417_03250at 742.849 kb on + strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.859 kb on + strand, within PS417_03250at 742.859 kb on + strand, within PS417_03250at 742.862 kb on + strand, within PS417_03250at 742.863 kb on - strand, within PS417_03250at 742.863 kb on - strand, within PS417_03250at 742.902 kb on + strand, within PS417_03250at 742.902 kb on + strand, within PS417_03250at 742.903 kb on - strand, within PS417_03250at 742.903 kb on - strand, within PS417_03250at 743.018 kb on - strand, within PS417_03250at 743.018 kb on - strand, within PS417_03250at 743.118 kb on + strand, within PS417_03250at 743.118 kb on + strand, within PS417_03250at 743.124 kb on + strand, within PS417_03250at 743.125 kb on - strand, within PS417_03250at 743.125 kb on - strand, within PS417_03250at 743.244 kb on + strand, within PS417_03250at 743.245 kb on - strand, within PS417_03250at 743.245 kb on - strand, within PS417_03250

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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740,240 + PS417_03240 0.27 -1.7
740,240 + PS417_03240 0.27 -1.5
740,323 - PS417_03240 0.36 -0.6
740,333 + PS417_03240 0.37 -2.0
740,334 - PS417_03240 0.37 -1.2
740,440 + PS417_03240 0.49 -1.3
740,440 + PS417_03240 0.49 +0.4
740,440 + PS417_03240 0.49 -0.4
740,441 - PS417_03240 0.49 -1.1
740,659 + PS417_03240 0.72 -0.3
740,659 + PS417_03240 0.72 -1.6
740,659 + PS417_03240 0.72 -1.1
740,659 + PS417_03240 0.72 -1.5
740,737 + PS417_03240 0.81 -1.4
740,913 + +0.6
740,981 + -2.2
740,981 + -0.9
741,122 + -2.1
741,165 - +0.2
741,439 - PS417_03245 0.30 +2.7
741,439 - PS417_03245 0.30 +0.3
741,448 + PS417_03245 0.30 -2.4
741,548 + PS417_03245 0.38 -1.3
741,549 - PS417_03245 0.38 -0.3
741,549 - PS417_03245 0.38 -0.9
741,549 - PS417_03245 0.38 +1.1
741,593 + PS417_03245 0.41 -1.6
741,593 + PS417_03245 0.41 -0.1
741,593 + PS417_03245 0.41 -1.8
741,594 - PS417_03245 0.41 -1.8
741,594 - PS417_03245 0.41 -1.6
741,594 - PS417_03245 0.41 -0.5
741,806 - PS417_03245 0.57 -2.0
741,806 - PS417_03245 0.57 +0.4
741,960 + PS417_03245 0.68 -2.8
741,961 - PS417_03245 0.68 -1.2
741,961 - PS417_03245 0.68 +1.3
741,993 + PS417_03245 0.71 +0.4
742,023 + PS417_03245 0.73 -1.0
742,023 + PS417_03245 0.73 -0.1
742,024 - PS417_03245 0.73 +0.4
742,179 + PS417_03245 0.84 +1.1
742,276 - -0.4
742,276 - +0.4
742,399 + -1.8
742,399 + +0.6
742,400 - +1.5
742,400 - +0.0
742,400 - -0.9
742,401 + +1.4
742,402 - -0.6
742,402 - +0.7
742,403 + -0.1
742,403 + -0.0
742,404 - -0.5
742,404 - -0.5
742,404 - +0.2
742,494 + -1.3
742,494 + -0.5
742,494 + -1.5
742,494 + +0.4
742,495 - +1.5
742,495 - +0.8
742,670 + PS417_03250 0.16 -2.2
742,671 - PS417_03250 0.16 +2.3
742,756 - PS417_03250 0.22 -1.4
742,849 + PS417_03250 0.28 +0.4
742,850 - PS417_03250 0.28 -0.3
742,850 - PS417_03250 0.28 -1.9
742,850 - PS417_03250 0.28 -0.5
742,859 + PS417_03250 0.29 +1.5
742,859 + PS417_03250 0.29 -1.6
742,862 + PS417_03250 0.29 +0.3
742,863 - PS417_03250 0.29 +0.2
742,863 - PS417_03250 0.29 -1.1
742,902 + PS417_03250 0.32 +1.8
742,902 + PS417_03250 0.32 -1.9
742,903 - PS417_03250 0.32 -1.5
742,903 - PS417_03250 0.32 +0.6
743,018 - PS417_03250 0.39 -0.1
743,018 - PS417_03250 0.39 +0.2
743,118 + PS417_03250 0.46 -3.2
743,118 + PS417_03250 0.46 +0.5
743,124 + PS417_03250 0.46 +0.1
743,125 - PS417_03250 0.47 -1.3
743,125 - PS417_03250 0.47 +2.3
743,244 + PS417_03250 0.55 +0.4
743,245 - PS417_03250 0.55 -0.3
743,245 - PS417_03250 0.55 -1.1

Or see this region's nucleotide sequence