Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03175 and PS417_03180 are separated by 8 nucleotides PS417_03180 and PS417_03185 are separated by 146 nucleotides PS417_03185 and PS417_03190 are separated by 144 nucleotides PS417_03190 and PS417_03195 are separated by 118 nucleotides
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
PS417_03180: PS417_03180 - hypothetical protein, at 728,990 to 729,172
_03180
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
PS417_03190: PS417_03190 - antibiotic biosynthesis monooxygenase, at 730,477 to 730,770
_03190
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.460 kb on + strand, within PS417_03175 at 728.497 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.631 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.747 kb on + strand, within PS417_03175 at 728.955 kb on - strand at 729.131 kb on - strand, within PS417_03180 at 729.189 kb on + strand at 729.216 kb on + strand at 729.216 kb on + strand at 729.218 kb on + strand at 729.219 kb on - strand at 729.264 kb on + strand at 729.292 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.313 kb on - strand at 729.522 kb on - strand, within PS417_03185 at 729.522 kb on - strand at 729.996 kb on + strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 730.024 kb on - strand, within PS417_03185 at 730.068 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.313 kb on + strand at 730.313 kb on + strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.317 kb on - strand at 730.534 kb on - strand, within PS417_03190 at 730.610 kb on + strand, within PS417_03190 at 730.649 kb on + strand, within PS417_03190 at 730.650 kb on - strand, within PS417_03190 at 730.770 kb on + strand at 730.804 kb on + strand at 730.804 kb on + strand at 730.805 kb on - strand at 730.805 kb on - strand at 730.817 kb on - strand at 730.832 kb on - strand at 730.920 kb on + strand at 730.921 kb on - strand at 730.921 kb on - strand at 730.921 kb on - strand at 731.024 kb on - strand, within PS417_03195
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 728,409 + PS417_03175 0.52 -2.3 728,409 + PS417_03175 0.52 +2.0 728,409 + PS417_03175 0.52 -2.4 728,409 + PS417_03175 0.52 +0.5 728,460 + PS417_03175 0.56 -2.3 728,497 - PS417_03175 0.59 +0.5 728,553 - PS417_03175 0.64 +8.7 728,553 - PS417_03175 0.64 -0.2 728,631 + PS417_03175 0.71 +0.2 728,711 + PS417_03175 0.77 -0.5 728,711 + PS417_03175 0.77 -0.9 728,747 + PS417_03175 0.80 +1.3 728,955 - +0.1 729,131 - PS417_03180 0.77 +0.7 729,189 + +1.9 729,216 + +2.5 729,216 + -1.2 729,218 + +0.3 729,219 - +0.4 729,264 + +0.6 729,292 + +0.8 729,312 + -0.5 729,312 + -0.3 729,312 + +0.4 729,313 - +0.6 729,522 - PS417_03185 0.20 +0.7 729,522 - +0.7 729,996 + PS417_03185 0.67 +1.0 729,997 - PS417_03185 0.67 +0.5 729,997 - PS417_03185 0.67 +2.7 730,024 - PS417_03185 0.70 -1.5 730,068 - PS417_03185 0.74 -0.4 730,148 - PS417_03185 0.82 +1.1 730,148 - PS417_03185 0.82 -1.2 730,148 - PS417_03185 0.82 +0.8 730,313 + +0.7 730,313 + -1.8 730,314 - -0.2 730,314 - +0.0 730,314 - -0.5 730,314 - -2.2 730,317 - -1.3 730,534 - PS417_03190 0.19 +0.4 730,610 + PS417_03190 0.45 -0.3 730,649 + PS417_03190 0.59 +0.4 730,650 - PS417_03190 0.59 -2.3 730,770 + +1.0 730,804 + -0.3 730,804 + +1.8 730,805 - -0.1 730,805 - +0.3 730,817 - -0.1 730,832 - -0.4 730,920 + +1.2 730,921 - -1.4 730,921 - -1.9 730,921 - -0.4 731,024 - PS417_03195 0.15 -0.4
Or see this region's nucleotide sequence