Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03160 and PS417_03165 are separated by 66 nucleotides PS417_03165 and PS417_03170 are separated by 147 nucleotides PS417_03170 and PS417_03175 are separated by 85 nucleotides PS417_03175 and PS417_03180 are separated by 8 nucleotides PS417_03180 and PS417_03185 are separated by 146 nucleotides
PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910
_03160
PS417_03165: PS417_03165 - hypothetical protein, at 726,977 to 727,357
_03165
PS417_03170: PS417_03170 - copper resistance protein CopZ, at 727,505 to 727,702
_03170
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
PS417_03180: PS417_03180 - hypothetical protein, at 728,990 to 729,172
_03180
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
Position (kb) 727
728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 726.978 kb on + strand at 726.979 kb on - strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.030 kb on + strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.063 kb on + strand, within PS417_03165 at 727.215 kb on + strand, within PS417_03165 at 727.279 kb on - strand, within PS417_03165 at 727.418 kb on + strand at 727.683 kb on - strand at 727.713 kb on + strand at 727.801 kb on + strand at 727.929 kb on + strand, within PS417_03175 at 727.962 kb on + strand, within PS417_03175 at 727.963 kb on - strand, within PS417_03175 at 727.963 kb on - strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.460 kb on + strand, within PS417_03175 at 728.497 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.631 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.747 kb on + strand, within PS417_03175 at 728.955 kb on - strand at 729.131 kb on - strand, within PS417_03180 at 729.189 kb on + strand at 729.216 kb on + strand at 729.216 kb on + strand at 729.218 kb on + strand at 729.219 kb on - strand at 729.264 kb on + strand at 729.292 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.313 kb on - strand at 729.522 kb on - strand, within PS417_03185 at 729.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 726,978 + +2.0 726,979 - -0.3 727,005 + -2.5 727,005 + +0.3 727,005 + -0.6 727,005 + -1.5 727,005 + -0.1 727,006 - +1.0 727,006 - +0.3 727,006 - +0.7 727,006 - +0.1 727,030 + PS417_03165 0.14 +1.5 727,044 - PS417_03165 0.18 -3.2 727,044 - PS417_03165 0.18 +0.9 727,063 + PS417_03165 0.23 +1.7 727,215 + PS417_03165 0.62 +0.9 727,279 - PS417_03165 0.79 +0.9 727,418 + +0.5 727,683 - +0.2 727,713 + +0.7 727,801 + +0.3 727,929 + PS417_03175 0.12 +0.3 727,962 + PS417_03175 0.15 +2.3 727,963 - PS417_03175 0.15 -1.6 727,963 - PS417_03175 0.15 +1.2 728,409 + PS417_03175 0.52 -2.3 728,409 + PS417_03175 0.52 +2.0 728,409 + PS417_03175 0.52 -2.4 728,409 + PS417_03175 0.52 +0.5 728,460 + PS417_03175 0.56 -2.3 728,497 - PS417_03175 0.59 +0.5 728,553 - PS417_03175 0.64 +8.7 728,553 - PS417_03175 0.64 -0.2 728,631 + PS417_03175 0.71 +0.2 728,711 + PS417_03175 0.77 -0.5 728,711 + PS417_03175 0.77 -0.9 728,747 + PS417_03175 0.80 +1.3 728,955 - +0.1 729,131 - PS417_03180 0.77 +0.7 729,189 + +1.9 729,216 + +2.5 729,216 + -1.2 729,218 + +0.3 729,219 - +0.4 729,264 + +0.6 729,292 + +0.8 729,312 + -0.5 729,312 + -0.3 729,312 + +0.4 729,313 - +0.6 729,522 - PS417_03185 0.20 +0.7 729,522 - +0.7
Or see this region's nucleotide sequence