Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03065 and PS417_03070 are separated by 125 nucleotides PS417_03070 and PS417_03075 overlap by 4 nucleotides PS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03080 and PS417_03085 are separated by 10 nucleotides
PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410
_03065
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
Position (kb) 707
708 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 706.370 kb on + strand at 706.371 kb on - strand at 706.391 kb on - strand at 706.426 kb on - strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.436 kb on - strand at 706.451 kb on - strand at 706.457 kb on - strand at 706.463 kb on - strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.478 kb on - strand at 706.547 kb on + strand at 706.548 kb on - strand at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070 at 706.978 kb on - strand, within PS417_03070 at 707.005 kb on - strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.137 kb on + strand, within PS417_03070 at 707.170 kb on - strand, within PS417_03070 at 707.215 kb on + strand, within PS417_03070 at 707.217 kb on + strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.323 kb on - strand at 707.323 kb on - strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.446 kb on + strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 706,370 + +0.2 706,371 - +1.2 706,391 - +0.5 706,426 - -1.4 706,431 + +0.4 706,431 + +3.5 706,431 + -1.3 706,432 - +0.6 706,432 - +0.1 706,432 - +0.1 706,435 + +0.8 706,435 + +1.5 706,435 + -0.8 706,435 + -0.2 706,435 + +0.7 706,436 - -0.8 706,451 - -1.2 706,457 - -1.7 706,463 - -0.6 706,469 + +0.4 706,469 + +1.0 706,469 + +1.5 706,469 + -2.5 706,470 - -0.6 706,470 - -1.9 706,470 - +0.5 706,473 + -0.5 706,473 + -2.1 706,473 + -0.1 706,473 + -0.8 706,473 + +1.7 706,473 + +2.4 706,474 - +0.2 706,474 - -0.3 706,474 - +2.3 706,474 - -0.1 706,474 - -1.8 706,477 + +0.1 706,477 + -1.4 706,477 + -0.9 706,477 + -1.4 706,478 - -0.7 706,547 + +0.0 706,548 - +0.2 706,718 + PS417_03070 0.23 +0.3 706,718 + PS417_03070 0.23 -0.1 706,718 + PS417_03070 0.23 +1.4 706,719 - PS417_03070 0.23 -1.1 706,861 - PS417_03070 0.41 -0.0 706,864 - PS417_03070 0.42 +0.8 706,978 - PS417_03070 0.56 -0.3 707,005 - PS417_03070 0.59 -0.1 707,102 + PS417_03070 0.72 -0.1 707,102 + PS417_03070 0.72 -0.5 707,137 + PS417_03070 0.76 -1.8 707,170 - PS417_03070 0.80 -0.4 707,215 + PS417_03070 0.86 +0.4 707,217 + PS417_03070 0.86 +0.2 707,218 - PS417_03070 0.86 +0.4 707,218 - PS417_03070 0.86 -0.2 707,218 - PS417_03070 0.86 +0.1 707,246 + +0.1 707,246 + -0.0 707,246 + -0.3 707,246 + +2.4 707,323 - -0.2 707,323 - -0.2 707,326 + +0.2 707,326 + +0.2 707,326 + -0.0 707,327 - +0.3 707,327 - -0.1 707,327 - +1.3 707,329 + -2.2 707,329 + -0.1 707,330 - -2.5 707,394 + PS417_03075 0.27 +0.2 707,394 + PS417_03075 0.27 +0.9 707,395 - PS417_03075 0.27 +0.0 707,395 - PS417_03075 0.27 +2.5 707,580 + -0.4 707,581 - +0.2 707,581 - -0.0 707,581 - -2.0 707,605 + +1.9 707,767 + PS417_03080 0.23 -0.1 708,038 - PS417_03080 0.61 -0.4 708,038 - PS417_03080 0.61 -1.3 708,446 + PS417_03085 0.14 +0.6 708,447 - PS417_03085 0.14 -0.0 708,447 - PS417_03085 0.14 -0.5 708,447 - PS417_03085 0.14 -2.1 708,447 - PS417_03085 0.14 -0.2
Or see this region's nucleotide sequence