Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00280 and PS417_00285 are separated by 227 nucleotides PS417_00285 and PS417_00290 are separated by 85 nucleotides
PS417_00280: PS417_00280 - radical SAM protein, at 54,309 to 55,367
_00280
PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326
_00285
PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959
_00290
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.730 kb on - strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.201 kb on - strand, within PS417_00280 at 55.201 kb on - strand at 55.272 kb on - strand at 55.314 kb on - strand at 55.365 kb on + strand at 55.525 kb on + strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.577 kb on + strand at 55.610 kb on - strand at 55.939 kb on - strand, within PS417_00285 at 55.939 kb on - strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.324 kb on + strand at 56.437 kb on + strand at 56.763 kb on + strand, within PS417_00290 at 56.763 kb on + strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.768 kb on + strand, within PS417_00290 at 56.769 kb on - strand, within PS417_00290 at 56.801 kb on - strand, within PS417_00290 at 56.958 kb on + strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 57.019 kb on + strand, within PS417_00290 at 57.020 kb on - strand, within PS417_00290
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 54,666 + PS417_00280 0.34 -0.3 54,666 + PS417_00280 0.34 -0.7 54,666 + PS417_00280 0.34 -0.3 54,667 - PS417_00280 0.34 -0.8 54,667 - PS417_00280 0.34 +0.1 54,730 - PS417_00280 0.40 -1.0 55,077 + PS417_00280 0.73 -0.3 55,077 + PS417_00280 0.73 -0.1 55,200 + PS417_00280 0.84 -1.3 55,200 + PS417_00280 0.84 +0.2 55,201 - PS417_00280 0.84 +0.5 55,201 - +1.7 55,272 - -2.2 55,314 - -0.4 55,365 + -0.6 55,525 + -0.8 55,526 - +0.3 55,526 - -0.4 55,526 - -1.1 55,577 + -0.3 55,610 - -1.6 55,939 - PS417_00285 0.47 +0.5 55,939 - PS417_00285 0.47 -0.9 56,196 + PS417_00285 0.82 -0.2 56,196 + PS417_00285 0.82 +0.3 56,201 - PS417_00285 0.83 +0.2 56,201 - PS417_00285 0.83 -1.1 56,201 - PS417_00285 0.83 -0.8 56,216 + PS417_00285 0.85 +0.0 56,216 + PS417_00285 0.85 -1.0 56,216 + PS417_00285 0.85 +0.5 56,216 + PS417_00285 0.85 -1.8 56,324 + +0.6 56,437 + -1.2 56,763 + PS417_00290 0.23 +0.1 56,763 + PS417_00290 0.23 -0.2 56,764 - PS417_00290 0.23 -0.7 56,764 - PS417_00290 0.23 -2.0 56,768 + PS417_00290 0.23 +0.8 56,769 - PS417_00290 0.23 +1.7 56,801 - PS417_00290 0.25 +0.7 56,958 + PS417_00290 0.35 +0.7 56,959 - PS417_00290 0.35 +0.8 56,959 - PS417_00290 0.35 -2.3 57,019 + PS417_00290 0.39 +2.0 57,020 - PS417_00290 0.39 +2.1
Or see this region's nucleotide sequence