Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02840 and PS417_02845 are separated by 40 nucleotides PS417_02845 and PS417_02850 overlap by 4 nucleotides PS417_02850 and PS417_02855 overlap by 4 nucleotides
PS417_02840: PS417_02840 - hypothetical protein, at 643,648 to 649,542
_02840
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 648.640 kb on + strand, within PS417_02840 at 648.641 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.740 kb on - strand, within PS417_02840 at 648.742 kb on + strand at 648.742 kb on + strand, within PS417_02840 at 648.742 kb on + strand, within PS417_02840 at 648.743 kb on - strand, within PS417_02840 at 648.775 kb on + strand, within PS417_02840 at 648.776 kb on - strand at 648.776 kb on - strand, within PS417_02840 at 648.798 kb on - strand, within PS417_02840 at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.991 kb on - strand at 648.993 kb on + strand at 648.994 kb on - strand at 648.994 kb on - strand at 649.050 kb on + strand at 649.103 kb on + strand at 649.104 kb on - strand at 649.234 kb on + strand at 649.234 kb on + strand at 649.235 kb on - strand at 649.235 kb on - strand at 649.239 kb on - strand at 649.312 kb on + strand at 649.607 kb on - strand at 650.182 kb on + strand at 650.417 kb on - strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.467 kb on - strand, within PS417_02845 at 650.568 kb on - strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.663 kb on + strand at 650.677 kb on - strand at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.853 kb on + strand, within PS417_02850 at 650.936 kb on + strand, within PS417_02850 at 651.015 kb on + strand, within PS417_02850 at 651.066 kb on + strand, within PS417_02850 at 651.067 kb on - strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.131 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.464 kb on + strand at 651.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 648,640 + PS417_02840 0.85 -2.2 648,641 - PS417_02840 0.85 -1.3 648,645 - PS417_02840 0.85 +0.5 648,645 - PS417_02840 0.85 -1.0 648,740 - PS417_02840 0.86 -2.3 648,742 + +0.5 648,742 + PS417_02840 0.86 +0.7 648,742 + PS417_02840 0.86 +0.0 648,743 - PS417_02840 0.86 -0.8 648,775 + PS417_02840 0.87 -0.3 648,776 - +1.5 648,776 - PS417_02840 0.87 -0.8 648,798 - PS417_02840 0.87 +1.5 648,964 + -0.5 648,964 + -0.2 648,964 + +0.9 648,964 + -0.5 648,991 - +0.7 648,993 + -0.5 648,994 - -0.8 648,994 - -1.5 649,050 + -0.4 649,103 + +0.2 649,104 - -0.2 649,234 + +0.7 649,234 + -0.6 649,235 - -0.8 649,235 - -1.1 649,239 - -0.9 649,312 + +0.5 649,607 - +0.3 650,182 + -0.1 650,417 - PS417_02845 0.82 +0.7 650,466 + PS417_02845 0.87 +2.3 650,466 + PS417_02845 0.87 +1.0 650,467 - PS417_02845 0.87 +1.9 650,568 - +0.4 650,570 + -0.0 650,570 + +1.5 650,570 + +0.5 650,663 + -0.9 650,677 - -0.4 650,839 + PS417_02850 0.26 +2.2 650,839 + PS417_02850 0.26 +1.1 650,839 + PS417_02850 0.26 -1.6 650,839 + PS417_02850 0.26 +0.0 650,839 + PS417_02850 0.26 +1.8 650,840 - PS417_02850 0.26 -0.3 650,840 - PS417_02850 0.26 -1.9 650,840 - PS417_02850 0.26 -0.0 650,840 - PS417_02850 0.26 +0.8 650,853 + PS417_02850 0.28 +0.9 650,936 + PS417_02850 0.36 -1.4 651,015 + PS417_02850 0.45 -0.0 651,066 + PS417_02850 0.50 +0.1 651,067 - PS417_02850 0.50 +0.8 651,068 + PS417_02850 0.50 +1.2 651,068 + PS417_02850 0.50 -0.1 651,068 + PS417_02850 0.50 -3.0 651,068 + PS417_02850 0.50 +0.2 651,068 + PS417_02850 0.50 -2.0 651,069 - PS417_02850 0.51 +0.3 651,069 - PS417_02850 0.51 -1.3 651,131 + PS417_02850 0.57 -0.0 651,254 + PS417_02850 0.70 +0.9 651,254 + PS417_02850 0.70 +2.5 651,464 + -0.8 651,554 + +0.4
Or see this region's nucleotide sequence