Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28450 and PS417_28455 are separated by 228 nucleotides PS417_28455 and PS417_28460 are separated by 123 nucleotides PS417_28460 and PS417_28465 are separated by 44 nucleotides
PS417_28450: PS417_28450 - XRE family transcriptional regulator, at 6,146,183 to 6,146,950
_28450
PS417_28455: PS417_28455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 6,147,179 to 6,148,546
_28455
PS417_28460: PS417_28460 - ATP synthase F0F1 subunit epsilon, at 6,148,670 to 6,149,086
_28460
PS417_28465: PS417_28465 - ATP synthase F0F1 subunit beta, at 6,149,131 to 6,150,507
_28465
Position (kb)
6147
6148
6149 Strain fitness (log2 ratio)
-1
0
1 at 6146.185 kb on - strand at 6146.461 kb on - strand, within PS417_28450 at 6146.538 kb on - strand, within PS417_28450 at 6146.722 kb on - strand, within PS417_28450 at 6146.722 kb on - strand, within PS417_28450 at 6147.036 kb on + strand at 6147.150 kb on + strand at 6147.150 kb on + strand at 6147.150 kb on + strand at 6147.154 kb on + strand at 6147.154 kb on + strand at 6147.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 6,146,185 - -0.5 6,146,461 - PS417_28450 0.36 -1.7 6,146,538 - PS417_28450 0.46 +0.6 6,146,722 - PS417_28450 0.70 -0.4 6,146,722 - PS417_28450 0.70 +0.9 6,147,036 + -1.1 6,147,150 + +0.3 6,147,150 + -0.1 6,147,150 + +1.6 6,147,154 + +1.3 6,147,154 + -0.6 6,147,155 - +0.4
Or see this region's nucleotide sequence