Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28435 and PS417_28440 are separated by 36 nucleotides PS417_28440 and PS417_28445 are separated by 60 nucleotides
PS417_28435: PS417_28435 - penicillin-binding protein, at 6,141,580 to 6,143,877
_28435
PS417_28440: PS417_28440 - hypothetical protein, at 6,143,914 to 6,144,279
_28440
PS417_28445: PS417_28445 - glucosamine--fructose-6-phosphate aminotransferase, at 6,144,340 to 6,146,172
_28445
Position (kb)
6143
6144
6145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6142.915 kb on + strand, within PS417_28435 at 6142.916 kb on - strand, within PS417_28435 at 6142.957 kb on + strand, within PS417_28435 at 6142.958 kb on - strand, within PS417_28435 at 6143.146 kb on + strand, within PS417_28435 at 6143.146 kb on + strand, within PS417_28435 at 6143.147 kb on - strand, within PS417_28435 at 6143.303 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.378 kb on - strand, within PS417_28435 at 6143.480 kb on - strand, within PS417_28435 at 6143.571 kb on - strand, within PS417_28435 at 6143.650 kb on + strand at 6143.725 kb on + strand at 6143.726 kb on - strand at 6143.888 kb on + strand at 6144.146 kb on + strand, within PS417_28440 at 6144.179 kb on + strand, within PS417_28440 at 6144.180 kb on - strand, within PS417_28440 at 6144.341 kb on + strand at 6144.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 6,142,915 + PS417_28435 0.58 -1.4 6,142,916 - PS417_28435 0.58 -1.0 6,142,957 + PS417_28435 0.60 -0.3 6,142,958 - PS417_28435 0.60 +1.0 6,143,146 + PS417_28435 0.68 +1.7 6,143,146 + PS417_28435 0.68 +0.8 6,143,147 - PS417_28435 0.68 +0.3 6,143,303 + PS417_28435 0.75 -0.4 6,143,377 + PS417_28435 0.78 -1.0 6,143,377 + PS417_28435 0.78 -0.6 6,143,377 + PS417_28435 0.78 -0.0 6,143,378 - PS417_28435 0.78 -1.3 6,143,480 - PS417_28435 0.83 -2.1 6,143,571 - PS417_28435 0.87 +1.8 6,143,650 + -0.7 6,143,725 + +1.5 6,143,726 - -0.1 6,143,888 + -0.1 6,144,146 + PS417_28440 0.63 -0.4 6,144,179 + PS417_28440 0.72 -0.5 6,144,180 - PS417_28440 0.73 -0.6 6,144,341 + -0.4 6,144,342 - +0.7
Or see this region's nucleotide sequence