Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02815 and PS417_02820 are separated by 12 nucleotides PS417_02820 and PS417_02825 are separated by 8 nucleotides PS417_02825 and PS417_02830 overlap by 1 nucleotides
PS417_02815: PS417_02815 - urea ABC transporter ATP-binding protein, at 637,785 to 638,483
_02815
PS417_02820: PS417_02820 - urea ABC transporter ATP-binding protein, at 638,496 to 639,317
_02820
PS417_02825: PS417_02825 - amino acid ABC transporter permease, at 639,326 to 640,393
_02825
PS417_02830: PS417_02830 - urea ABC transporter permease, at 640,393 to 641,895
_02830
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.456 kb on - strand at 638.509 kb on + strand at 638.877 kb on + strand, within PS417_02820 at 638.981 kb on + strand, within PS417_02820 at 639.157 kb on + strand, within PS417_02820 at 639.363 kb on + strand at 639.576 kb on + strand, within PS417_02825 at 639.576 kb on + strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.215 kb on + strand, within PS417_02825 at 640.248 kb on + strand, within PS417_02825 at 640.258 kb on + strand, within PS417_02825 at 640.259 kb on - strand, within PS417_02825 at 640.607 kb on + strand, within PS417_02830 at 640.608 kb on - strand, within PS417_02830 at 640.854 kb on - strand, within PS417_02830 at 641.143 kb on - strand, within PS417_02830 at 641.143 kb on - strand, within PS417_02830 at 641.144 kb on + strand, within PS417_02830 at 641.144 kb on + strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 638,456 - -1.4 638,509 + -2.0 638,877 + PS417_02820 0.46 +0.5 638,981 + PS417_02820 0.59 +1.2 639,157 + PS417_02820 0.80 +1.0 639,363 + +1.5 639,576 + PS417_02825 0.23 -0.7 639,576 + PS417_02825 0.23 -0.3 639,577 - PS417_02825 0.24 -1.1 639,577 - PS417_02825 0.24 -0.8 640,111 - PS417_02825 0.74 +0.2 640,111 - PS417_02825 0.74 -3.5 640,215 + PS417_02825 0.83 +1.8 640,248 + PS417_02825 0.86 -1.5 640,258 + PS417_02825 0.87 -0.3 640,259 - PS417_02825 0.87 -0.1 640,607 + PS417_02830 0.14 +1.5 640,608 - PS417_02830 0.14 +0.3 640,854 - PS417_02830 0.31 -0.1 641,143 - PS417_02830 0.50 +0.3 641,143 - PS417_02830 0.50 +0.7 641,144 + PS417_02830 0.50 -0.1 641,144 + PS417_02830 0.50 +0.5 641,145 - PS417_02830 0.50 +1.7 641,145 - PS417_02830 0.50 +1.2 641,145 - PS417_02830 0.50 -0.7
Or see this region's nucleotide sequence