Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28315 and PS417_28320 are separated by 11 nucleotides PS417_28320 and PS417_28325 overlap by 4 nucleotides PS417_28325 and PS417_28330 overlap by 4 nucleotides PS417_28330 and PS417_28335 are separated by 3 nucleotides
PS417_28315: PS417_28315 - zinc ABC transporter permease, at 6,113,216 to 6,114,082
_28315
PS417_28320: PS417_28320 - metal ABC transporter substrate-binding protein, at 6,114,094 to 6,114,972
_28320
PS417_28325: PS417_28325 - phosphoribosyl-AMP cyclohydrolase, at 6,114,969 to 6,115,382
_28325
PS417_28330: PS417_28330 - carbonate dehydratase, at 6,115,379 to 6,115,939
_28330
PS417_28335: PS417_28335 - dihydroorotase, at 6,115,943 to 6,117,280
_28335
Position (kb)
6114
6115
6116 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6114.104 kb on + strand at 6114.264 kb on + strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.568 kb on + strand, within PS417_28320 at 6114.584 kb on - strand, within PS417_28320 at 6114.875 kb on - strand, within PS417_28320 at 6114.932 kb on - strand at 6115.106 kb on - strand, within PS417_28325 at 6115.330 kb on - strand, within PS417_28325 at 6115.330 kb on - strand, within PS417_28325 at 6115.790 kb on + strand, within PS417_28330 at 6115.790 kb on + strand, within PS417_28330 at 6115.790 kb on + strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6115.791 kb on - strand, within PS417_28330 at 6116.057 kb on + strand at 6116.057 kb on + strand at 6116.058 kb on - strand at 6116.058 kb on - strand at 6116.058 kb on - strand at 6116.166 kb on - strand, within PS417_28335 at 6116.198 kb on - strand, within PS417_28335 at 6116.300 kb on + strand, within PS417_28335 at 6116.300 kb on + strand, within PS417_28335 at 6116.300 kb on + strand, within PS417_28335 at 6116.300 kb on + strand, within PS417_28335 at 6116.301 kb on - strand, within PS417_28335 at 6116.301 kb on - strand, within PS417_28335 at 6116.301 kb on - strand, within PS417_28335 at 6116.319 kb on + strand, within PS417_28335 at 6116.320 kb on - strand, within PS417_28335
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 6,114,104 + -2.1 6,114,264 + PS417_28320 0.19 -0.0 6,114,265 - PS417_28320 0.19 +0.8 6,114,265 - PS417_28320 0.19 -0.1 6,114,265 - PS417_28320 0.19 -2.4 6,114,265 - PS417_28320 0.19 -2.2 6,114,265 - PS417_28320 0.19 -0.3 6,114,568 + PS417_28320 0.54 +0.6 6,114,584 - PS417_28320 0.56 +0.1 6,114,875 - PS417_28320 0.89 -0.0 6,114,932 - +0.4 6,115,106 - PS417_28325 0.33 -1.2 6,115,330 - PS417_28325 0.87 -1.5 6,115,330 - PS417_28325 0.87 -0.1 6,115,790 + PS417_28330 0.73 -0.9 6,115,790 + PS417_28330 0.73 -0.8 6,115,790 + PS417_28330 0.73 -2.7 6,115,791 - PS417_28330 0.73 -2.0 6,115,791 - PS417_28330 0.73 -0.7 6,115,791 - PS417_28330 0.73 +0.6 6,115,791 - PS417_28330 0.73 -2.0 6,115,791 - PS417_28330 0.73 -0.0 6,115,791 - PS417_28330 0.73 +0.9 6,116,057 + -1.3 6,116,057 + -1.0 6,116,058 - -1.7 6,116,058 - -1.4 6,116,058 - +0.6 6,116,166 - PS417_28335 0.17 -0.3 6,116,198 - PS417_28335 0.19 -0.0 6,116,300 + PS417_28335 0.27 -0.0 6,116,300 + PS417_28335 0.27 -1.0 6,116,300 + PS417_28335 0.27 -1.7 6,116,300 + PS417_28335 0.27 +2.9 6,116,301 - PS417_28335 0.27 -0.7 6,116,301 - PS417_28335 0.27 -0.8 6,116,301 - PS417_28335 0.27 -0.4 6,116,319 + PS417_28335 0.28 -1.0 6,116,320 - PS417_28335 0.28 -2.5
Or see this region's nucleotide sequence