Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28305 and PS417_28310 overlap by 4 nucleotides PS417_28310 and PS417_28315 overlap by 1 nucleotides PS417_28315 and PS417_28320 are separated by 11 nucleotides PS417_28320 and PS417_28325 overlap by 4 nucleotides
PS417_28305: PS417_28305 - GTP cyclohydrolase, at 6,111,652 to 6,112,548
_28305
PS417_28310: PS417_28310 - manganese ABC transporter ATP-binding protein, at 6,112,545 to 6,113,216
_28310
PS417_28315: PS417_28315 - zinc ABC transporter permease, at 6,113,216 to 6,114,082
_28315
PS417_28320: PS417_28320 - metal ABC transporter substrate-binding protein, at 6,114,094 to 6,114,972
_28320
PS417_28325: PS417_28325 - phosphoribosyl-AMP cyclohydrolase, at 6,114,969 to 6,115,382
_28325
Position (kb)
6113
6114
6115 Strain fitness (log2 ratio)
-2
-1
0
1 at 6112.253 kb on + strand, within PS417_28305 at 6112.254 kb on - strand, within PS417_28305 at 6112.254 kb on - strand, within PS417_28305 at 6112.564 kb on + strand at 6113.162 kb on - strand at 6113.458 kb on - strand, within PS417_28315 at 6113.531 kb on + strand, within PS417_28315 at 6113.693 kb on + strand, within PS417_28315 at 6113.694 kb on - strand, within PS417_28315 at 6113.960 kb on + strand, within PS417_28315 at 6113.960 kb on + strand, within PS417_28315 at 6113.960 kb on + strand, within PS417_28315 at 6113.961 kb on - strand, within PS417_28315 at 6113.961 kb on - strand, within PS417_28315 at 6114.104 kb on + strand at 6114.264 kb on + strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.265 kb on - strand, within PS417_28320 at 6114.568 kb on + strand, within PS417_28320 at 6114.584 kb on - strand, within PS417_28320 at 6114.875 kb on - strand, within PS417_28320 at 6114.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 6,112,253 + PS417_28305 0.67 +0.4 6,112,254 - PS417_28305 0.67 -0.2 6,112,254 - PS417_28305 0.67 -1.2 6,112,564 + -1.1 6,113,162 - +0.6 6,113,458 - PS417_28315 0.28 -1.4 6,113,531 + PS417_28315 0.36 -2.2 6,113,693 + PS417_28315 0.55 -2.4 6,113,694 - PS417_28315 0.55 +1.6 6,113,960 + PS417_28315 0.86 -1.6 6,113,960 + PS417_28315 0.86 -1.0 6,113,960 + PS417_28315 0.86 +1.3 6,113,961 - PS417_28315 0.86 -1.0 6,113,961 - PS417_28315 0.86 +1.2 6,114,104 + -2.1 6,114,264 + PS417_28320 0.19 -0.0 6,114,265 - PS417_28320 0.19 +0.8 6,114,265 - PS417_28320 0.19 -0.1 6,114,265 - PS417_28320 0.19 -2.4 6,114,265 - PS417_28320 0.19 -2.2 6,114,265 - PS417_28320 0.19 -0.3 6,114,568 + PS417_28320 0.54 +0.6 6,114,584 - PS417_28320 0.56 +0.1 6,114,875 - PS417_28320 0.89 -0.0 6,114,932 - +0.4
Or see this region's nucleotide sequence