Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02770 and PS417_02775 are separated by 135 nucleotides PS417_02775 and PS417_02780 are separated by 238 nucleotides
PS417_02770: PS417_02770 - membrane protein, at 629,599 to 630,612
_02770
PS417_02775: PS417_02775 - heat-shock protein, at 630,748 to 632,016
_02775
PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199
_02780
Position (kb) 630
631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 629.822 kb on + strand, within PS417_02770 at 629.823 kb on - strand, within PS417_02770 at 630.445 kb on + strand, within PS417_02770 at 630.807 kb on + strand at 631.268 kb on + strand, within PS417_02775 at 631.268 kb on + strand, within PS417_02775 at 631.269 kb on - strand, within PS417_02775 at 631.826 kb on + strand, within PS417_02775 at 631.827 kb on - strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 631.850 kb on + strand, within PS417_02775 at 632.020 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.054 kb on + strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.055 kb on - strand at 632.078 kb on - strand at 632.138 kb on + strand at 632.259 kb on - strand at 632.270 kb on + strand at 632.271 kb on - strand at 632.273 kb on + strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.633 kb on - strand, within PS417_02780
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 629,822 + PS417_02770 0.22 +2.5 629,823 - PS417_02770 0.22 +1.9 630,445 + PS417_02770 0.83 +3.4 630,807 + +1.1 631,268 + PS417_02775 0.41 +1.5 631,268 + PS417_02775 0.41 +1.4 631,269 - PS417_02775 0.41 -0.5 631,826 + PS417_02775 0.85 +2.5 631,827 - PS417_02775 0.85 -0.9 631,850 + PS417_02775 0.87 +1.9 631,850 + PS417_02775 0.87 +0.9 632,020 + +1.0 632,054 + -0.9 632,054 + +1.7 632,054 + +1.5 632,054 + +3.6 632,054 + +1.7 632,055 - -1.2 632,055 - -2.2 632,055 - +1.7 632,055 - -1.2 632,055 - +0.4 632,055 - +0.4 632,078 - -2.2 632,138 + +0.7 632,259 - -1.3 632,270 + +0.2 632,271 - +2.5 632,273 + -0.1 632,274 - -0.7 632,274 - -1.3 632,274 - -1.6 632,411 + PS417_02780 0.17 +1.2 632,411 + PS417_02780 0.17 +0.7 632,411 + PS417_02780 0.17 +1.0 632,412 - PS417_02780 0.17 +0.6 632,412 - PS417_02780 0.17 -3.1 632,633 - PS417_02780 0.40 +0.0
Or see this region's nucleotide sequence