Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27560 and PS417_27565 overlap by 4 nucleotides PS417_27565 and PS417_27570 are separated by 352 nucleotides
PS417_27560: PS417_27560 - adenylate cyclase, at 5,944,796 to 5,947,636
_27560
PS417_27565: PS417_27565 - nucleoside diphosphate kinase regulator, at 5,947,633 to 5,948,046
_27565
PS417_27570: PS417_27570 - frataxin, at 5,948,399 to 5,948,731
_27570
Position (kb) 5947
5948
5949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5946.714 kb on - strand, within PS417_27560 at 5946.858 kb on - strand, within PS417_27560 at 5946.921 kb on + strand, within PS417_27560 at 5946.922 kb on - strand, within PS417_27560 at 5946.922 kb on - strand at 5946.954 kb on - strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.276 kb on - strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.395 kb on + strand at 5947.395 kb on + strand at 5947.399 kb on + strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.409 kb on + strand at 5947.522 kb on - strand at 5947.578 kb on - strand at 5947.578 kb on - strand at 5948.321 kb on + strand at 5948.322 kb on - strand at 5948.352 kb on - strand at 5948.852 kb on + strand at 5948.853 kb on - strand at 5948.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,946,714 - PS417_27560 0.68 +0.3 5,946,858 - PS417_27560 0.73 -2.2 5,946,921 + PS417_27560 0.75 -1.6 5,946,922 - PS417_27560 0.75 -0.4 5,946,922 - -0.0 5,946,954 - PS417_27560 0.76 +0.2 5,947,100 + PS417_27560 0.81 +0.8 5,947,100 + PS417_27560 0.81 -0.1 5,947,100 + PS417_27560 0.81 -0.2 5,947,100 + PS417_27560 0.81 -2.0 5,947,100 + PS417_27560 0.81 -0.4 5,947,100 + PS417_27560 0.81 +0.3 5,947,101 - PS417_27560 0.81 +0.6 5,947,101 - PS417_27560 0.81 +1.9 5,947,101 - PS417_27560 0.81 -0.3 5,947,101 - PS417_27560 0.81 -0.6 5,947,101 - PS417_27560 0.81 +0.2 5,947,101 - PS417_27560 0.81 -0.9 5,947,265 + PS417_27560 0.87 -2.8 5,947,265 + PS417_27560 0.87 -0.0 5,947,265 + PS417_27560 0.87 +0.4 5,947,265 + PS417_27560 0.87 +1.0 5,947,265 + PS417_27560 0.87 +0.3 5,947,265 + PS417_27560 0.87 +0.1 5,947,266 - PS417_27560 0.87 +0.1 5,947,266 - PS417_27560 0.87 -3.2 5,947,266 - PS417_27560 0.87 +2.8 5,947,275 + PS417_27560 0.87 +0.4 5,947,275 + PS417_27560 0.87 -0.8 5,947,275 + PS417_27560 0.87 -1.2 5,947,276 - PS417_27560 0.87 +0.9 5,947,352 + PS417_27560 0.90 -0.3 5,947,352 + PS417_27560 0.90 +0.1 5,947,395 + -0.6 5,947,395 + -1.0 5,947,399 + +0.1 5,947,400 - -1.0 5,947,400 - -1.4 5,947,400 - +0.0 5,947,409 + -2.8 5,947,522 - +0.3 5,947,578 - -3.0 5,947,578 - -0.0 5,948,321 + +0.5 5,948,322 - +1.3 5,948,352 - -0.3 5,948,852 + -0.4 5,948,853 - -1.1 5,948,946 + -0.9
Or see this region's nucleotide sequence